BAC Information

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BAC

Clone NameMSMg01-065G06
Chromosome1 (Build37)
Map Location 114,618,274 - 114,618,640
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065G06.T7 (MSMg01no065_g06.b1)MSMg01-065G06.TJ (MSMg01no065_g06.g1)
ACCAG290613AG290614
length677681
length of high quality
(start - end)
371 (45 - 415)250 (72 - 321)
definitionCHROMAT_FILE: MSMg01no065_g06.b1 PHD_FILE: MSMg01no065_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:53 2005CHROMAT_FILE: MSMg01no065_g06.g1 PHD_FILE: MSMg01no065_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGG
AATTCACAGTTCTAACCCTAATCAGGCTACCATACAAAATGAGGCTGGGA
CCTAGGCATTGTTGGGTCAGTGATGGACAGGGCTGCATTTAACCAGAACT
GCTTAAGTTGGCATATCTTTAGTGCACTAGTCACACTTCAGGACACAAAA
GATGGATTTCAGAGTTGGACTGGTGGCTATCTTAGTCTTTTGTCCAAATT
TTCACACTTGAATAAATTCACTTTTTCTGCTTCAACTATTAATATGACTT
CTTTTATAGGCTTATTGAAGATGGGGGTCTGACTCTAGCTTGGACTCCAG
GCTGTCACCCCCAAGTTTAATAATGCCAGTGCTTCAATAAAAAGAATATG
ACACCTTTTCAATATCAAATTGGATATCTACCTACCAATGTCAAGCCCTC
ACACATGTGCCGCAAGTACTCTACATACGGAGTTCCATTCTCAGCCTCAC
TCTAGGACATTTTCTTCCCATATAATTGCTGACATGGAACATTAATCTTT
AGAAAAAGGACTGGCCGATGAGGTTAATGTGTTAATACCGCAATTGACAT
ATATTGGCGCACCGCTTCTGGCTTCGGGATACTTATGCTGCTTAACACTC
TTTCCCCCATAATTAACCGAACCCCCG
CCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCTGAAATTCTTGGTTTTGTTCTATACTCCATTTTT
TGATTGGGTTGTTTTGTTTTTTGATGTTTGACTTCTTGAGTTTTTATATA
TTGTGTATATTGCCCTCTATCAGATGGGGGACTAGTGAAGATTTCGTCCA
ATCTCTAGGTTGCAGATTTGTCTTATTGACTGTGTCCTTTGCCTTTCAGA
ACCTTTCCAGTTTTATGAGGTCCCATTTATCTATTCTTGATCTTAGAGCA
TGAGCCATTGGAGTTCTGTTTTTGAAATTCCTCCCTGTGCCAGGTCTAGC
AACAGTCCCAAAGCCTAACTAACACTATTACTTATGCTATGGAGTGCTCC
CAAAAAGGATCTGTCATGACTGCCCTCCAAAAGACCCAATATGCAGTTGA
TAGAATCAGATGCATTCACCCAATGGAAAGAAGTAGCTGACCCCTGTTGT
TCAATTACGGAAGGCTGATTGAACCTGAGGAGAAGGTTGATTCTCTAGGA
GGTCCTCTGAATAGTGGAATTTGGCCCATATTTGTACCACCCGCTATTAC
TCTTAAGTAGCTACCTTATTATTATTCTCATAAATAAATTTGTTAAAACT
TGTTATAGCGTTGATTTTTGTCCATTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_g06.b1 MSMg01no065_g06.b1 CHROMAT_FILE:
MSMg01no065_g06.b1 PHD_FILE: MSMg01no065_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:53 2005
         (371 letters)



>mm_chr1_114618069_114618840
          Length = 772

 Score =  687 bits (355), Expect = 0.0
 Identities = 364/367 (99%), Gaps = 1/367 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacagttctaac-cctaatcaggctaccatacaaaatgaggctgggacctaggca 64
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaattcacagttctaacaactaatcaggctaccatacaaaatgaggctgggacctaggca 513

                                                                       
Query: 65  ttgttgggtcagtgatggacagggctgcatttaaccagaactgcttaagttggcatatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttgttgggtcagtgatggacagggctgcatttaaccagaactgcttaagttggcatatct 453

                                                                       
Query: 125 ttagtgcactagtcacacttcaggacacaaaagatggatttcagagttggactggtggct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttagtgcactagtcacacttcaggacacaaaagatggatttcagagttggactggtggct 393

                                                                       
Query: 185 atcttagtcttttgtccaaattttcacacttgaataaattcactttttctgcttcaacta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atcttagtcttttgtccaaattttcacacttgaataaattcactttttctgcttcaacta 333

                                                                       
Query: 245 ttaatatgacttcttttataggcttattgaagatgggggtctgactctagcttggactcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ttaatatgacttcttttataggcttattgaagatgggggtctgactctagcttggactcc 273

                                                                       
Query: 305 aggctgtcacccccaagtttaataatgccagtgcttcaataaaaagaatatgacaccttt 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 272 aggctgtcacccccaagtttaataatgccagtgctgcaataaaaagaatatgacaccttt 213

                  
Query: 365 tcaatat 371
           |||||||
Sbjct: 212 tcaatat 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space:   276206
Effective search space used:   276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)