BAC Information

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BAC

Clone NameMSMg01-065H09
Chromosome1 (Build37)
Map Location 70,083,412 - 70,083,937
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065H09.T7 (MSMg01no065_h09.b1)MSMg01-065H09.TJ (MSMg01no065_h09.g1)
ACCAG290666AG290667
length672676
length of high quality
(start - end)
520 (21 - 540)370 (56 - 425)
definitionCHROMAT_FILE: MSMg01no065_h09.b1 PHD_FILE: MSMg01no065_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:58 2005CHROMAT_FILE: MSMg01no065_h09.g1 PHD_FILE: MSMg01no065_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTACCTATATCGAGAGGATCCGCGGAATTCAACTTGGGACCTCATATT
AAGTTTGCACACAGACACACAGACACACACACACACACACACACACATAC
TCATACTCACAGAGGCACGTATGATAATAAGATAGCATTTAATGAACATC
TTCCTGTGTCTAAAGAATTAGTATGCTAGGACTTTCTATTGGCAACTGAA
ATGGTTATTTGTAACAATTCTACTTGTAATACAAGTAAAACTCACAAATT
TATATCTTACACTGAGAAAGTCTATCACTATGCAGTCGTGGTTGGTCACT
GAAACACTCTACAGTGCTTATTATGAATAAGCACTGGTTTCAAATGAAAG
AGAATTAAATCAAAGAATTTTATTTAATTACCATACATTTTTCCCACCTT
ACCTTTTTCTTCACTGAGTAATACAGGTCTCTTACCTTTTTAATTAAAAT
AATACAATATATTAATTAGCATTCACAATGTCATAATCATTTTGTTATAA
CAATCATCTACCAGTATAACAATCAATCATCTAACCAATACACATAGTTA
GATACATAGAAGCCATCATTAATGTTTAAGAAAAGTTACTTTCCACAGCT
TTTTAGATACCATGCACACAATAATTATTTTCACAGCTGTAAACTTACTT
TCTAACTGTGCTATAGTCTGTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTTTAGATCTATATGCCAGTTTTAATTGGATTATTTGGGGTTTG
ATACTTACTGAGTTAATATATTTTGGAAATTAGATCTTTATCAGATGGGG
TTTTAGTAAAAACCTTTTCCTATTATGTAGGCTGCTGCTTTGTTCATATG
GTAGTGTCCTTTGCTTTACAGTTATCTCCAGAGTCATGGGGTCCCATTTA
TTAATTGTTGATCTTAGTGCCTATGCTATTGGTGCTCTGTTCAGAAAATT
GTCTCAGAAAGTTGGTTCCAAGTGTTCAAGGATGTTCCTAACTTTCTCTT
CTATCAGGTTCAGTGTACCTGATTTTATGTTGAGGACTTTGATCTATCGA
GTTTTGTGCAGGGTGAGAAATTTGGATCTATTTGCCTTCCTCTAAATGTA
GGCATCCAGTTTGACCAGCATCATTTGTTAAAGATGCTTTTTATTTTCCA
CTGTGAATTTTCTCTATTAAAAACAAGTGTCTATGGGTTGTGTACATTTA
TGTATACAATTGTCTTTCTATTCCTTTGACCTTTGTTTCTTGCTTTATGG
CTATATGACGTGACTTTATTACTAGAAACTTTGAATCCAGGAATGCGTAA
CCCTATACATGCCCTTTATTGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_h09.b1 MSMg01no065_h09.b1 CHROMAT_FILE:
MSMg01no065_h09.b1 PHD_FILE: MSMg01no065_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:58 2005
         (520 letters)



>mm_chr1_70083218_70084137
          Length = 920

 Score =  928 bits (480), Expect = 0.0
 Identities = 509/526 (96%), Gaps = 12/526 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaacttgggacctcatattaagtttgcacacagacacacagacaca--------- 57
           ||||||||||||||||||||||| ||||||||||||||||||||| |||||         
Sbjct: 195 gaattcaacttgggacctcatataaagtttgcacacagacacacacacacacacacacac 254

                                                                       
Query: 58  ---cacacacacacacacacacatactcatactcacagaggcacgtatgataataagata 114
              |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 255 actcacacacacacacacacacacactcatactcacagaggcacgtatgataataagata 314

                                                                       
Query: 115 gcatttaatgaacatcttcctgtgtctaaagaattagtatgctaggactttctattggca 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gcatttaatgaacatcttcctgtgtctaaagaattagtatgctaggactttctattggca 374

                                                                       
Query: 175 actgaaatggttatttgtaacaattctacttgtaatacaagtaaaactcacaaatttata 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 actgaaatggttatttgtaacaattctacttgtaatacaagtaaaactcacaaatttata 434

                                                                       
Query: 235 tcttacactgagaaagtctatcactatgcagtcgtggttggtcactgaaacactctacag 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tcttacactgagaaagtctatcactatgcagtcgtggttggtcactgaaacactctacag 494

                                                                       
Query: 295 tgcttattatgaataagcactggtttcaaatgaaagagaattaaatcaaagaattttatt 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgcttattatgaataagcactggtttcaaatgaaagagaattaaatcaaagaattttatt 554

                                                                       
Query: 355 taattaccatacatttttcccaccttacctttttcttcactgagtaatacaggtctctta 414
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 555 taattaccatacatttttcccagtttacctttttcttcactgagtaatacaggtctctta 614

                                                                       
Query: 415 cctttttaattaaaataatacaatatattaattagcattcacaatgtcataatcattttg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cctttttaattaaaataatacaatatattaattagcattcacaatgtcataatcattttg 674

                                                         
Query: 475 ttataacaatcatctaccagtataacaatcaatcatctaaccaata 520
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttataacaatcatctaccagtataacaatcaatcatctaaccaata 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)