BAC Information

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BAC

Clone NameMSMg01-065H17
Chromosome1 (Build37)
Map Location 17,731,945 - 17,732,472
singlet/doubletsinglet
Overlap geneCrispld1
Upstream geneLOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15
Downstream geneLOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065H17.T7 (MSMg01no065_h17.b1)MSMg01-065H17.TJ (MSMg01no065_h17.g1)
ACCAG290682AG290683
length688697
length of high quality
(start - end)
639 (33 - 671)528 (74 - 601)
definitionCHROMAT_FILE: MSMg01no065_h17.b1 PHD_FILE: MSMg01no065_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:00 2005CHROMAT_FILE: MSMg01no065_h17.g1 PHD_FILE: MSMg01no065_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCGGCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCTTTATT
TAGCTCTGTACCCTATTTTTATGGGGTTATTTGTATTTCTGGAGTCCAGC
TTCTTAAGCTCTTTGTATATATTGGCTATTTTTCCCCTATCAGTTTTAGG
ATTGGTAAAAATACTTTCCCAATCTGTTGGTGCCCTTTTTGTCTTATTGA
CAGTGGCTTTTGCCTTACAGGTGCTTTGCAATTTTATGAGGTCCCATTTG
TCAATTCTTGATCTTACAGTAGAAGTCATAGCCGTTTTGTTTAAGAATTT
TTCTCTTATGCTGGTGAGATGGCTCAGCAGGTAAGAGCACCCGACTGCTC
TTCTAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAAC
CATCCGCAATGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGATAGCTA
CACTGTACTTACATATAATAAATAATAAATAAATCTTTTAAAAAAAAGAA
TTTTTCTCCTGTGCCCATATCTTCGAGACTTTTCAGCACTTTCTCCTCAA
TAAATTTCAGTGTCTCTGGTTTTATGTTGAGGTCTTTGATCCACTTAGAC
TTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCGCCATTCTTCTAC
ATGATAACAGCCCATTGTTCCAGTACAATTTGTTGAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGGGCTAGGTTATGAAACAGAGCTTC
TATTTGGTTCTCTTTTCAGATACATCTTGACTAACTTGAGCCAACACATT
ATACAGCCAACCACAGGGGAAAATTGGCGGGAAGGACACTGTGGAGAGAG
ACCACACAGAGGGATCAGCAGCTGTGAGATTTCTTGGCCCATGCTTGAGA
ACGGGGAGAGTACCTCAGGTGATGGTGGCTTAGGTCCAGTAATAAATGAA
AGCCTCACCCCCACCACCCACTCCCAGGGACCACCCAGCTAAGCCTACGG
AAAAGGCCTGGAGACTCTACTGAAGGCCAGCTTCTTCTTGCTTTGCACTT
GACTATGTACTTTGGCCTCTGAGGTTTTTCCATAGAAACTGGAACTTTTG
GGAAGGAGATACAACTGCTTCTAAACTCACAACGTTGTGTTTTCCAAAAC
AGTGTTTATATCTGTTACACAGAAAGTGAAATAAAATTTAAAGCATGCTC
ATACCTGTTTGGCTAACCTTACTTATTTATAAAATGTGTCAGAAAAATAC
AAGGTAACTCAGAAAATTGTCTTAAGGAGTAACATGCATTCATTTGTGCA
CATGTATGTACAGATATTCAGATATTTTATACCCACTATTAATCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_h17.g1 MSMg01no065_h17.g1 CHROMAT_FILE:
MSMg01no065_h17.g1 PHD_FILE: MSMg01no065_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:00 2005
         (528 letters)



>mm_chr1_17731745_17732672
          Length = 928

 Score = 1006 bits (520), Expect = 0.0
 Identities = 526/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggctaggttatgaaacagagcttctatttggttctcttttcagatacatcttgacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tggggctaggttatgaaacagagcttctatttggttctcttttcagatacatcttgacta 669

                                                                       
Query: 61  acttgagccaacacattatacagccaaccacaggggaaaattggcgggaaggacactgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 acttgagccaacacattatacagccaaccacaggggaaaattggcgggaaggacactgtg 609

                                                                       
Query: 121 gagagagaccacacagagggatcagcagctgtgagatttcttggcccatgcttgagaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gagagagaccacacagagggatcagcagctgtgagatttcttggcccatgcttgagaacg 549

                                                                       
Query: 181 gggagagtacctcaggtgatggtggcttaggtccagtaataaatgaaagcctcaccccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gggagagtacctcaggtgatggtggcttaggtccagtaataaatgaaagcctcaccccca 489

                                                                       
Query: 241 ccacccactcccagggaccacccagctaagcctacggaaaaggcctggagactctactga 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 488 ccacccactcccagggaccacccagctaaacctacggaaaaggcctggagactctactga 429

                                                                       
Query: 301 aggccagcttcttcttgctttgcacttgactatgtactttggcctctgaggtttttccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggccagcttcttcttgctttgcacttgactatgtactttggcctctgaggtttttccat 369

                                                                       
Query: 361 agaaactggaacttttgggaaggagatacaactgcttctaaactcacaacgttgtgtttt 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agaaactggaacttttgagaaggagatacaactgcttctaaactcacaacgttgtgtttt 309

                                                                       
Query: 421 ccaaaacagtgtttatatctgttacacagaaagtgaaataaaatttaaagcatgctcata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ccaaaacagtgtttatatctgttacacagaaagtgaaataaaatttaaagcatgctcata 249

                                                           
Query: 481 cctgtttggctaaccttacttatttataaaatgtgtcagaaaaataca 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cctgtttggctaaccttacttatttataaaatgtgtcagaaaaataca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)