BAC Information

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BAC

Clone NameMSMg01-065J11
Chromosome1 (Build37)
Map Location 84,430,125 - 84,430,268
singlet/doubletsinglet
Overlap geneDner
Upstream gene5033414K04Rik, LOC100039638
Downstream geneTrip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065J11.T7 (MSMg01no065_j11.b1)MSMg01-065J11.TJ (MSMg01no065_j11.g1)
ACCAG290764AG290765
length767773
length of high quality
(start - end)
366 (104 - 469)144 (132 - 275)
definitionCHROMAT_FILE: MSMg01no065_j11.b1 PHD_FILE: MSMg01no065_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:09 2005CHROMAT_FILE: MSMg01no065_j11.g1 PHD_FILE: MSMg01no065_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNTTTTTTTTTTTTTTNTTTTTTTTTNTTNNTNTNNNTTTTAT
TTATATTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGA
ACCGCGGAATTCCCTCTTTCCCTGTACGGGAGATGGGACTCGAACTCAGC
TAACCAGGCTTGGCAGCAAGTGATTTTGCCTGATGAACCATCTCTCTGGT
TTCCTATGTTAGTTTATTGCAGTTACTGTAAGAAAGTACCATAGGCCGGG
TGGTTTAAAAACAAGAGCTTTGCTTTTATATTATTCTCAGGATTCAAGTC
CACGATCAAAGATTGGTACAGTTGATTTCCTCTGAGGTCTCTTTCCTTGG
CTCTTTTTTGACTTGCCTTATTGCTATGTCCTAACATGGCCTCCCTCGGT
GCTTGTGAGGTCTCTTACATTGTATAAGGCCACCAACCCTTTCTTCATTA
GGGTCTCACCTTAATGGTTTCACCCGCATTTACCTATCTCTTTAAATCTT
TAAAGATGGTGACATTCTGAGGTACTGTTACAAGACTTCCACATATCGAG
TTTTGGACGAAACAGTATCAGTTTATAACACTTTTTAAGGAAGATTTTCC
CATTCTAGCGGGTCGTTTAGTGATTTCTTGGATGCTTTGACTGTTACCTC
TGTTTTAGTAAAGCCTATAAAGTTTTGCTTATTACCTGCACAAAAGCATC
TTACTCCTTGTTCCTCTTGTTATGTATCCTTTTATTCCATCCCTTTAACT
GTATATTCCCCCCCTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTATATT
TTTGTTGTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGTGAAGCTGCCTCCC
AGAAGCACATACATATGAAAAGGTGATTGTCGTCTTGAATTTTTTTATAG
TAGGATGTTGATGTAAACTTGAAAGGCCTTCTCTAAGGATTGCCTGAAGG
CAATCTGGGTTAACTAGGTTACAATCTAGCCACATGCAAAAAAGAAATAC
ACACTACCCCCCCCCCCTTTTTTTTTCTCTTATGACTTTCATGTTTCTTT
TGTCCACTAGAGGGTGGATTCTAGCTATTATTATCTACATTGACTAAGTG
TGAAAAAGGTTTCTTAAAATGTTAATCTCCGAGGTACCATAGACAGAATC
TTTTTATCATCATGACATATGGTACCACCACAGAAATATCTATCCTGTAC
TCTGCATTTACAAGTGGAACATTTATCCCCTTAAAATCAAACCTACTCAT
CTCAAATATTCCTTTTTACCTTCCATTCCTAATTAATTTCCCCCAGTACA
TCTCTTTTAATATTTGATCCTCTTGCAATTGATTATCACTCTTTTCCTTT
GTAACATCCTTCTTCTCTTTGACATCCTGTAAATATCACCTGCCTCACTC
GGAATTTTGCCTCTAATCTCTAACCCAACTTAATGAAGGATATTCACTTT
ATACCTTCCCTGTTTGTTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_j11.g1 MSMg01no065_j11.g1 CHROMAT_FILE:
MSMg01no065_j11.g1 PHD_FILE: MSMg01no065_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:09 2005
         (144 letters)



>mm_chr1_84429925_84430468
          Length = 544

 Score =  255 bits (132), Expect = 7e-73
 Identities = 141/144 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagtgaagctgcctcccagaagcacatacatatgaaaaggtgattgtcgtcttgaatt 60
           ||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 201 tgcagtgaagctgcctcccagaagcacgtacatatgtaaaggtgattgtcatcttgaatt 260

                                                                       
Query: 61  tttttatagtaggatgttgatgtaaacttgaaaggccttctctaaggattgcctgaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttatagtaggatgttgatgtaaacttgaaaggccttctctaaggattgcctgaaggc 320

                                   
Query: 121 aatctgggttaactaggttacaat 144
           ||||||||||||||||||||||||
Sbjct: 321 aatctgggttaactaggttacaat 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)