Query= MSMg01no065_p04.b1 MSMg01no065_p04.b1 CHROMAT_FILE:
MSMg01no065_p04.b1 PHD_FILE: MSMg01no065_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:35 2005
(608 letters)
>mm_chr1_119016218_119017227
Length = 1010
Score = 1118 bits (578), Expect = 0.0
Identities = 600/608 (98%), Gaps = 5/608 (0%)
Strand = Plus / Plus
Query: 5 gaattctgacctgtatcttg-atcatgaataatattcttttacaa-catgtatttaagtg 62
|||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattctgacctgtattttgcatcatgaataatattcttttacaaacatgtatttaagtg 264
Query: 63 tgcatttgattgtttattatgtatgtgtgcatatggatatatgtgcattttttatgagaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcatttgattgtttattatgtatgtgtgcatatggatatatgtgcattttttatgagaa 324
Query: 123 gcaggtgcctgtccacctgcagaggccagaaaagcatatcagatcctttgatagtcaaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaggtgcctgtccacctgcagaggccagaaaagcatatcagatcctttgatagtcaaat 384
Query: 183 gattgccttgtattcaaacaccaaaggaagaaatcctttcaacaaggtctttaaaattgg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattgccttgtattcaaacaccaaaggaagaaatcctttcaacaaggtctttaaaattgg 444
Query: 243 aaattcaaacatttttaacagtttctcagttctggatttggagaattactttgctctttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaattcaaacatttttaacagtttctcagttctggatttggagaattactttgctctttt 504
Query: 303 tgtattccaccaacttcctcttatccatcatacatttcttttaattgaaagattttaata 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtattccaccaacttcctcttatccatcatacatttcttttaattgaaagattttaata 564
Query: 363 gcatgttaaatatagatacaaacacatgtatgaaatttaatgtgtatttattgatccgat 422
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtatgttaaatatagatacaaacacatgtatgaaatttaatgtgtatttattgatccgat 624
Query: 423 gtgtgtatgtatacacacacacacacacaca--gaacaatggagggaaaagaaaagagaa 480
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 625 gtgtgtatgtatacacacacacacacacacacagaacaacggagggaaaagaaaagagaa 684
Query: 481 agagagagaaaaaagagagggagacagaaatttttcagtatgtagtatctttttgtttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agagagagaaaaaagagagggagacagaaatttttcagtatgtagtatctttttgtttct 744
Query: 541 gaataaattttaataatattgataaatattatatttgatattgataaaatttaacttttt 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaataaattttaataatattgataaatattatatttgatattgataaaatttaactttt- 803
Query: 601 atctcttc 608
||||||||
Sbjct: 804 atctcttc 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1010
Length adjustment: 10
Effective length of query: 598
Effective length of database: 1000
Effective search space: 598000
Effective search space used: 598000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_p04.g1 MSMg01no065_p04.g1 CHROMAT_FILE:
MSMg01no065_p04.g1 PHD_FILE: MSMg01no065_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:35 2005
(581 letters)
>mm_chr1_119134477_119135458
Length = 982
Score = 665 bits (344), Expect = 0.0
Identities = 362/368 (98%), Gaps = 1/368 (0%)
Strand = Plus / Minus
Query: 2 gtagcatcttctggggttactgaaacatttactctctgattc-aatatttcagattgtaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 569 gtagcatcttctggggttactgaaacatttactctctgattcaaatatttcagattgtaa 510
Query: 61 ctacatgttgtaaagcatatacagaagatatccatccatgagcacagaacgtatatataa 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 509 ctacatgttgtaaagcatatacagaagatatccatccatgagcacagaacatatatataa 450
Query: 121 tagaggaaaagggaatactctaatgttcattagtagtaaactgattgaataactttgagt 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tagaggaaaagggaatgctctaatgttcattagtagtaaactgattgaataactttgagt 390
Query: 181 aaatctctaaaaagatctgtaataactataaattatattggatgtctttatttaatattg 240
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 389 aaatctctaaaaagatatgtaataactatgaattatattggatgtctttatttaatattg 330
Query: 241 tgagttaagttctgactattacctaaaggggagaaacagtgtggagagaaacatatggct 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgagttaagttctgactattacataaaggggagaaacagtgtggagagaaacatatggct 270
Query: 301 tcctataaatatgataactaactgagccctttagtgttggtatatgccaaatactctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcctataaatatgataactaactgagccctttagtgttggtatatgccaaatactctctc 210
Query: 361 ctgttctt 368
||||||||
Sbjct: 209 ctgttctt 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space: 555012
Effective search space used: 555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
