Query= MSMg01no065_p10.b1 MSMg01no065_p10.b1 CHROMAT_FILE:
MSMg01no065_p10.b1 PHD_FILE: MSMg01no065_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:37 2005
(575 letters)
>mm_chr1_146551924_146552901
Length = 978
Score = 1060 bits (548), Expect = 0.0
Identities = 567/574 (98%), Gaps = 3/574 (0%)
Strand = Plus / Minus
Query: 5 gaattctaaccctttcactatattccttggacacttcaataaaatagagaaggacatgct 64
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 gaattctaacccactgactatattccttggacacttcaataaaatagagaaggacatgct 551
Query: 65 taaagatagtcagtactataatggagaagattgggagagctctctattgtgaaagccaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 taaagatagtcagtactataatggagaagattgggagagctctctattgtgaaagccaat 491
Query: 125 gctacaaaatgctctatttcttaatatttctttgggtactgactgactagaatggcagaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gctacaaaatgctctatttcttaatatttctttgggtactgactgactagaatggcagaa 431
Query: 185 gctgagcaggct--aaaaaaaaaaat-gaagtatattttacaatcatagcaatggctaac 241
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 430 gctgagcaggctaaaaaaaaaaaaatagaagtatattttacaatcatagcaatggctaac 371
Query: 242 cagcaaccagaatcatagctattcatgatctgtagcaacaccatagatatcacaatgctc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cagcaaccagaatcatagctattcatgatctgtagcaacaccatagatatcacaatgctc 311
Query: 302 tttgaagagcaacaaaatcagtaacaaatgaatgtgatgctcagttcctaacaatcatag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttgaagagcaacaaaatcagtaacaaatgaatgtgatgctcagttcctaacaatcatag 251
Query: 362 aataacttgggacttaattgtaaaaagagttataactaaatattaggacagagaaaaaga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aataacttgggacttaattgtaaaaagagttataactaaatattaggacagagaaaaaga 191
Query: 422 aatgaaggagaaagagagaggaaagaggagccaaataacaagggaagagaaagaaaggga 481
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 190 aatgaaggagaaagagagaggaaagaggagccaaacaacaagggaagagaaagaaaggga 131
Query: 482 gggagtactgagagaagaaaaccctcctatagtatccagaattaagtcaaagttcaggta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gggagtactgagagaagaaaaccctcctatagtatccagaattaagtcaaagttcaggta 71
Query: 542 caatatccacacatcagtgataaattgaatttca 575
||||||||||||||||||||||||||||||||||
Sbjct: 70 caatatccacacatcagtgataaattgaatttca 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 978
Length adjustment: 10
Effective length of query: 565
Effective length of database: 968
Effective search space: 546920
Effective search space used: 546920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_p10.g1 MSMg01no065_p10.g1 CHROMAT_FILE:
MSMg01no065_p10.g1 PHD_FILE: MSMg01no065_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:37 2005
(516 letters)
>mm_chr1_146416611_146417526
Length = 916
Score = 837 bits (433), Expect = 0.0
Identities = 451/459 (98%), Gaps = 4/459 (0%)
Strand = Plus / Plus
Query: 1 tcagcacagggttagaaagaaaggtcacctgcgtgatagaattatgcatatttgctccag 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tcagcacagggttagaaagaaaggtcacctgtgtgatagaattatgcatatttgctccag 260
Query: 61 acactgggttttgaaactgatttacagagtttatagaaaaggcagccaaggaaagaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acactgggttttgaaactgatttacagagtttatagaaaaggcagccaaggaaagaagaa 320
Query: 121 ctaaagatatggccaggggtttcgatggaggcatactttagtcagggctatgggtgttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaagatatggccaggggtttcgatggaggcatactttagtcagggctatgggtgttgt 380
Query: 181 gagagaaattttaaggatgaatgtggtaatatatatgaaacactctctgttccctggaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagaaattttaaggatgaatgtggtaatatatatgaaacactctctgttccctggaag 440
Query: 241 aaatgttctataaaaacataacgtattgctgattcttagaatgaatggtgaaggttgaaa 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggttctataaaaacataacgtattgctgattcttagaatgaatggtgaaggttgaaa 500
Query: 301 gattttcagacatagggaaagggcacattcacaatccagtgagaagcaaaggatattgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gattttcagacatagggaaagggcacattcacaatccagtgagaagcaaaggatattgaa 560
Query: 361 aatggaagtcagaaacaagaaagtgaaagtaaagcaattttaaagctcctcaacagctca 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 561 aatggaagtcagaaacaagaaagtgaaagtaaagcaattttaaagctcctcagcagcaca 620
Query: 421 ggctcacacacacacacacacacacacacacacacacac 459
|||||||||||||||||||||||||||||||||||
Sbjct: 621 ----cacacacacacacacacacacacacacacacacac 655
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
