BAC Information

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BAC

Clone NameMSMg01-066B01
Chromosome1 (Build37)
Map Location 21,314,825 - 21,314,943
singlet/doubletsinglet
Overlap geneLOC100040309
Upstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8, Efhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041
Downstream geneNdg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28, LOC435612, LOC100040338, Rims1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066B01.T7 (MSMg01no066_b01.b1)MSMg01-066B01.TJ (MSMg01no066_b01.g1)
ACCAG291127AG291128
length689671
length of high quality
(start - end)
119 (82 - 200)402 (84 - 485)
definitionCHROMAT_FILE: MSMg01no066_b01.b1 PHD_FILE: MSMg01no066_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:44 2005CHROMAT_FILE: MSMg01no066_b01.g1 PHD_FILE: MSMg01no066_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTTTCTCTATATTTGCGGCGCTATACGACTCCTATTGTCCGAGGATCC
GCGGAATTCTTCACCACATACCCTCTTGGTGGAACGGGAAATTCCTTCCA
AGGATAGGTTAGTTACAAAGGAAGTGCAGCCAGTGCACTTCATTGTCTAT
GCAATGCAGCAGCCTGTAGGCTCAGCCAGATCAAGAGGAGGTCTTGGGAC
CATCAGAGTGGATTTCTAAGACTGAGAGCTAGTAAAATCTATATCCTCAT
AGCTGAGCTGGATCCACTTCCAGGAGCAGAGCCACTAGTCATAGTTGTAG
TATAGAACCCATCTGGCACTCAGCCTTTGACTGGACCAAAGAGGTTTTTA
TCCCCCTTACAGGTGATATTGAAAGAGGCTACCAAGAGAGGACATGATGT
TCAGGGGCTTTATTTTCCATTTCTAGTTACAGAGCACATTGATCCTCATG
GTTAATATCGCCAGAGATTATCAGCCTCTCCCGTTTACACAGTTAAAGGA
ATAAAATACAGTGTTTGCTCACAGTATGTGTTTGACAGCTCCTATTTACT
CAGGCTATGCTCAAATCATTGGTCACAGGGACCCCTCCCTCCTGAAGACT
GTAAGTAATTGGCAAGGGCATGCTCGTCAGGACTATTATTATTATTATTA
TCATTATTACTATTATTATTATTATTATTGCAAAGCAGA
AAAACCGGGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGC
CCCATTTTTTAATGGGGTTATTTGCTTTTCTGAAGTCCACCTTCTTGAGT
TCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAA
GATACTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTACTGACGGTGTCTT
TTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTC
GATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGT
GCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTGAGTG
TCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTATATTTGACCTTAGTA
CAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATAATAACAATCA
GTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGCATAG
TTTTAGCTCCCTTGTCGAAGATCTATTGACCATAGGTTGTGTGGGTTCAT
TTCTGTCTCATAAAATGAGATGTTTATAGTACCTTCTACTTCTATTTTGA
GTATAAGCTCGTGCTGAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_b01.b1 MSMg01no066_b01.b1 CHROMAT_FILE:
MSMg01no066_b01.b1 PHD_FILE: MSMg01no066_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:44 2005
         (119 letters)



>mm_chr1_21314625_21315143
          Length = 519

 Score =  223 bits (115), Expect = 4e-63
 Identities = 118/119 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacgggaaattccttccaaggataggttagttacaaaggaagtgcagccagtgcacttc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaaccggaaattccttccaaggataggttagttacaaaggaagtgcagccagtgcacttc 260

                                                                      
Query: 61  attgtctatgcaatgcagcagcctgtaggctcagccagatcaagaggaggtcttgggac 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 attgtctatgcaatgcagcagcctgtaggctcagccagatcaagaggaggtcttgggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)