BAC Information

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BAC

Clone NameMSMg01-066E04
Chromosome1 (Build37)
Map Location 11,712,807 - 11,713,023
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneLOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066E04.T7 (MSMg01no066_e04.b1)MSMg01-066E04.TJ (MSMg01no066_e04.g1)
ACCAG291275AG291276
length709705
length of high quality
(start - end)
217 (71 - 287)246 (75 - 320)
definitionCHROMAT_FILE: MSMg01no066_e04.b1 PHD_FILE: MSMg01no066_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:59 2005CHROMAT_FILE: MSMg01no066_e04.g1 PHD_FILE: MSMg01no066_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGACGAATCCGCGGAAT
TCTCCCATTGACTAAAAATCCTAGCCTCTGCTACTCTTAAATGTGGATTT
TTTTTCTTGCCATTTTGAAAACAAGGCAAATAATGGAATGTATACCTTGT
ATGGCCACTATCTGACAATGTGATAGCCTGGAATTTTAATTATTTCATGT
TTTATATTTACTGCTACTTCTCAAGTGATCATCAATTTAAGCTATTTAGT
CCAAAATAATTCTTTAAGTGTTACTACAGATTTTAATCTTAGTAACTTTG
ATAAAAGAAAATTAATACTTTTTTTGTCCTTGATGACTATCTGACTAATT
ATCATGTGCTCAGCACATTATAACAGACTTGTGTCCTTTATGGTTGTAGA
ATCTGGTTATGGAGAAGCAATTCCAAGCCTCCTGCTGCTGCCATCTCATC
TGACGCTTGTCCAATCCATTTTGCATTTTGCTTTCTCAGATTCCATGTGC
TGTTCTCAATTCCTTATACCCCAGTTTGTTTATTACCGTCACCCCCTCTT
ACCCATCACAAAACCTTTTTTTTTTTCTATTTTCACTTCCTTGAATATCC
TGTTTGAATTCTCGTTGTTTCTTTCTGAATATCCTTTTGTTTGTCTCTTC
CCTTCCTTTTGTTTCCACACTCTGTCTTTATCTCACTCTCCTTATTCTCT
CAATTTTTT
CCCGATGAAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAACCCAATGGCTGAG
AAGCACCTTAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAAT
CAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCAAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCTAGGATGTGTAGAAAGAGGAGCA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCATAAAATTGGACATAGTACTACCGGAGGATCCCG
CAATACATCTCCTGGGCATATATCCCGAAGATGTCCCAACCGGTAATAAT
GACACATGCTCTACTGTTCATAGTAGCCTTACTTATAATAGCCAGAATCT
AGAATGAATCCTGATGCCCCTCATCAGATGACTGGATCCCATAACCACGC
GGCATTTTTATTCAATGGAGTACTACTCCGCTTTTAAAAAGAATGATTCC
ATGAAATTCCCACCCCTTTGTATGGACCCGTACGTCTTTCTTATTGATTG
ATGCTCTATTACCCTTAAATGAACTCCCCTATTTTGGACTCCTCTGTTTT
GCCGGCAATTTATTCTCAGAAATCTTATTACTCGTGTGTACACACGGATT
CCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_e04.b1 MSMg01no066_e04.b1 CHROMAT_FILE:
MSMg01no066_e04.b1 PHD_FILE: MSMg01no066_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:59 2005
         (217 letters)



>mm_chr1_11712607_11713223
          Length = 617

 Score =  420 bits (217), Expect = e-122
 Identities = 217/217 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagcctctgctactcttaaatgtggattttttttcttgccattttgaaaacaaggcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagcctctgctactcttaaatgtggattttttttcttgccattttgaaaacaaggcaaa 260

                                                                       
Query: 61  taatggaatgtataccttgtatggccactatctgacaatgtgatagcctggaattttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatggaatgtataccttgtatggccactatctgacaatgtgatagcctggaattttaat 320

                                                                       
Query: 121 tatttcatgttttatatttactgctacttctcaagtgatcatcaatttaagctatttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttcatgttttatatttactgctacttctcaagtgatcatcaatttaagctatttagt 380

                                                
Query: 181 ccaaaataattctttaagtgttactacagattttaat 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaaataattctttaagtgttactacagattttaat 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)