BAC Information

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BAC

Clone NameMSMg01-066E06
Chromosome1 (Build37)
Map Location 87,501,895 - 87,502,014
singlet/doubletsinglet
Overlap geneSp140
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110
Downstream geneSp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066E06.T7 (MSMg01no066_e06.b1)MSMg01-066E06.TJ (MSMg01no066_e06.g1)
ACCAG291279AG291280
length777723
length of high quality
(start - end)
123 (68 - 190)59 (118 - 176)
definitionCHROMAT_FILE: MSMg01no066_e06.b1 PHD_FILE: MSMg01no066_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:00 2005CHROMAT_FILE: MSMg01no066_e06.g1 PHD_FILE: MSMg01no066_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGGAAT
TCATAGCGTGTCCCCTGTCTTACCTTCGCTAGCCTGAGTAGAGATTTAAT
AATGTATTGATCTTTCCAAAGGATGTGAGCATAATGCCCACTTCTTTTAA
TTCTATGGATTTCTACTTTAATTTCATTGAATCTTTGCCTTCATTGGCAT
GAAATCATTCCTCACAACATTGTTCACTTATGCCTCTCTTAGCTTCCGAT
ACTTACTTTGCCGTATGTTTCCCCTTATCCACTGCCTTTGCTGTGTCTCA
CATTTAACAACTCCTAGACTTCACTGCTTTTTTAACGTATTAGAACGGTT
CACACTTTTGCTTGTCTTACTTTTTTCCACCCAAATTATCCCCATTTATT
TTACGTATTGAGTGCCCTGCGCCTCTTTGTGTCCTTTTGAACACTTCAAT
AATTTCTTTTGTCGCACATTTTTCACTCTCTCACCTATATGCTATGACCC
CCTACACTTTTCCCTCTCTACCTTATCTCCTCATATTTTATTCCCACGCC
TTCTTCTTTTTATCTCCTTTTCCCCACTCTTGTATCCGTCCCCAAAACTT
TAAAGAATTTCTTCCCCTTTATACCCTTTTCCCATTAATTTTCCGTTTTT
ATTATCCCTCTCTTCTTATCGTTTCCGTTTATACCTTTTTTTCTTTCCTC
CCTTAGCATTTATCCTTTTTATCTTCCCTCTTCCCTATATTTTATCCCCT
CCATCCTTATATCGTTGCCATTCTTTT
TCATTATAGTGCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGAATCTGCCTGAGTAGTCCAAACAA
TAAACTTAGCTGGAGGGATCTTGCCATGAAATCACCACTCTCTAAATCTT
GTTATTTCCTTCCTTAATATCTTTCTGACAAGGTGTTTCACACTGCATTA
GCCTCTGTTTTTTATTTCCATGATACCCCCTTCATGTAATTCACATTGCA
TCCTTATATCTTTGATAGATGATAACATATTGAAATCATGTTGCCAAACT
CATTCTATGAGACAGTTTTATTCTTATCCTTCACCTGTTCTGACTATATG
TTCATGTATTTCATTATGTTTATTTGCTTCCTTTTTTACAGCTTTTACTT
GCTTTAACGTTCTTTCATGTACTTCTTCATCGTAATTATACATTTCTTCT
TTAAAGGTTCTTTATTACTTCCCATTACATTGACTTTCAAATCCCCTTCT
CGCGCATCTGTCTCATTATATAATCTATGTCTCGTTGTCAATAGTCATCT
TCTCTCTCATTCTTCCTCTGTTTTTTTTCCTTTTACTGTCCTCTTTGATA
AATTGTTTACCCTCTTATTGCCTATTTTTACTTGCCCTCTACATTATTTC
TCCATATTATTAACCCCCTATTATTTTTTTAAATGTCTTTATAACTATAT
AATTCATTTATTTTTTTCTTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_e06.b1 MSMg01no066_e06.b1 CHROMAT_FILE:
MSMg01no066_e06.b1 PHD_FILE: MSMg01no066_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:00 2005
         (123 letters)



>mm_chr1_87501695_87502217
          Length = 523

 Score =  232 bits (120), Expect = 5e-66
 Identities = 120/120 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaccttcgctagcctgagtagagatttaataatgtattgatctttccaaaggatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaccttcgctagcctgagtagagatttaataatgtattgatctttccaaaggatgtg 260

                                                                       
Query: 61  agcataatgcccacttcttttaattctatggatttctactttaatttcattgaatctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcataatgcccacttcttttaattctatggatttctactttaatttcattgaatctttg 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)