BAC Information

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BAC

Clone NameMSMg01-066E17
Chromosome1 (Build37)
Map Location 144,128,615 - 144,128,793
singlet/doubletsinglet
Overlap genenone
Upstream geneEG226472, LOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066E17.T7 (MSMg01no066_e17.b1)MSMg01-066E17.TJ (MSMg01no066_e17.g1)
ACCAG291300AG291301
length751728
length of high quality
(start - end)
49 (80 - 128)179 (75 - 253)
definitionCHROMAT_FILE: MSMg01no066_e17.b1 PHD_FILE: MSMg01no066_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:02 2005CHROMAT_FILE: MSMg01no066_e17.g1 PHD_FILE: MSMg01no066_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGC
GGAATTCTCACCTGATGCATCACAAATGGTTGAGAAGCACCTGAAAAAAT
GTTCAGCATCCTTAATCATCATGGAAATGCATATCATAAGAACCCTGAGA
TTCCACCTCACACCAGTAAGAATTGCTAAGATCAAAAATTCAGGTGATAG
CAGATGTTGGCTTCTATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGT
GGGATTGCAAGCTTGTACTACCACTCTGGAAATCAATCTGGTGGTTCCTC
AGAAAATTGGACATAGAAATACCTTAGGATCCCGCAATACCTCTCCTGGG
CATATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGTATGCTTTATTCTTAATCGCCAGAAGCTGGAAAGAACCCAT
ATGCCCCTCTTCATATGATTGTATACAGTACATATGGTTTCTATTACACA
ATGTTAGTACCACACATGGATTTAAATTGACTGAATTTTTTGTAATTCCT
TAGTTAATTGTATGTATTCTGTTTGGGCATCTTCTTTGTATTGATGTAAT
CTCTTTCTTATTATGGAATGTACTTCTATATGTATCTCAATGGATAAGTG
TATATTATTCCCTTATACTCAATAATATCTACAGAACTTATTAAGCCTTT
TTCCTTAAACCTTGACATTTCTAGAAGTACCTAAGCACATATGTGTTTTT
C
CCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGGGGATATTTTACAATACCTGGTT
TCAAGTTATGTTACTGTGCTATGGTAATAACAGGACTGTACTTTCACAAA
ACTTGCCACAGAGGTCAGTTCTTATGATGGAGCAAATATGTCCATAGAAG
AAGGTTGCCTGTTTCTCTATAAACTTACAAAAAACCAAAGCAAAAAATAA
AAATAAAATAAAAATAAACAAACCAACAAAATGACCTTTCACTAAACAAG
AATCTCAGTATCAGGTGAATCATTAACTTCACCATGAGGCTGATGGTCTG
AACCTGCCAGAGGAGATAGTGGCAGGCAAGCCTTGAATTGCATGAAGGGG
TAAGGTTTCCATGGTAACACATATATTAAGACGAATGGTATACAAACAGT
ATTTCAGGAAAGTACCATGTTTTCTGAACAGTATCTAAAATTGAAGCAAA
TGAATAATAAGCAAAGACTGGTCAAAATGTTTTCTGAGCTACTTATTTGA
GCGATGATTAATGTCTAGAAACTACATTGTCCCCCCCCATTATTCAAATA
ATACCTAAATAATTATACATGAATCTCCGTCATTTAATATTTAACTTAAT
ATATTTTATCAACCATTTAAAATGGTCCCCACAGACTGAGTAGTAAGTCT
ATACTAAAGAACAATCATTGTGCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_e17.g1 MSMg01no066_e17.g1 CHROMAT_FILE:
MSMg01no066_e17.g1 PHD_FILE: MSMg01no066_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:02 2005
         (179 letters)



>mm_chr1_144128415_144128993
          Length = 579

 Score =  339 bits (175), Expect = 8e-98
 Identities = 178/179 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggggatattttacaatacctggtttcaagttatgttactgtgctatggtaataacagg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggggatattttacaatatctggtttcaagttatgttactgtgctatggtaataacagg 260

                                                                       
Query: 61  actgtactttcacaaaacttgccacagaggtcagttcttatgatggagcaaatatgtcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgtactttcacaaaacttgccacagaggtcagttcttatgatggagcaaatatgtcca 320

                                                                      
Query: 121 tagaagaaggttgcctgtttctctataaacttacaaaaaaccaaagcaaaaaataaaaa 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaagaaggttgcctgtttctctataaacttacaaaaaaccaaagcaaaaaataaaaa 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)