Query= MSMg01no066_f13.b1 MSMg01no066_f13.b1 CHROMAT_FILE:
MSMg01no066_f13.b1 PHD_FILE: MSMg01no066_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:07 2005
(517 letters)
>mm_chr1_103023198_103024114
Length = 917
Score = 851 bits (440), Expect = 0.0
Identities = 473/484 (97%), Gaps = 1/484 (0%)
Strand = Plus / Minus
Query: 34 cctctctttatctgttcctttcttccttttttctcctttttttcttccttatcacccttc 93
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 917 cctctctttatctgttcctttcttccttttttctcc-ttttttcttccttatcacccttc 859
Query: 94 tctcgttcctcctcccccttcctccttattctttatcttttagtgtgcatatgtgtagaa 153
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tcttgttcctcctcccccttcctccttattctttatcttttagtgtgcatatgtgtagag 799
Query: 154 tcttgcctatatatatctaggctggccagggtctcactatatataccaggctggcctgaa 213
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 798 tcttacctatatatatctaggctggctagggtctcactatatataccaggctggcctgaa 739
Query: 214 gctcatatagatctttctatcgggtttaatacacagaactatagtggaacactatgaagt 273
|||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct: 738 gctcatatagatctttctatcgggtttaattcacagaaatatagtggaacattatgaagt 679
Query: 274 aaaccttgcttctagagtggacccacagattccaatatctgttgtgtgttgagctgggag 333
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaatcttgcttctagagtggacccacagattccaatatctgttgtgtgttgagctgggag 619
Query: 334 ggatacttattttcctattttttagtttagatgccagaatgcccgaactgataccttgtc 393
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 618 ggatacttattttcctattttttagtttagatgccagaatgccggaactgataccttgtc 559
Query: 394 tcttggaaacagatgtgatctgcagataatatccctatgtgggtattagcagaaatatgt 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcttggaaacagatgtgatctgcagataatatccctatgtgggtattagcagaaatatgt 499
Query: 454 ccttgccatctgttggaatacaagatgtgccagctgtgggtatcatgaagagctaattaa 513
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 498 ccttgccatctgttggaatacaagatgtgccagctgtggttatcatgaagagctaattaa 439
Query: 514 tttg 517
||||
Sbjct: 438 tttg 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_f13.g1 MSMg01no066_f13.g1 CHROMAT_FILE:
MSMg01no066_f13.g1 PHD_FILE: MSMg01no066_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:07 2005
(519 letters)
>mm_chr1_102949382_102950300
Length = 919
Score = 795 bits (411), Expect = 0.0
Identities = 477/519 (91%), Gaps = 31/519 (5%)
Strand = Plus / Plus
Query: 1 tgtgggcagacaggtgtgagtaagggtaatagtgagaagaagaatgtgaaaggagtgtta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 201 tgtgggcagacaggtgtgagtaagggtaatagtgagaagaagaatgtgaaaggaatttta 260
Query: 61 tctgaaggaaaacacgaaaataccatgatgaaatcagtgaattttatgttaatttaaagg 120
|||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 261 tctgaaggaaaacatgaaaataccatgataaaatcagtgaatttt--------------- 305
Query: 121 taacttaaactgtaagaggtctggggagaagactcaataggaaggagtgctagttgcaca 180
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 306 ----------------aggtctgggaagaagactcaataggaaggagtgctagttgcaca 349
Query: 181 gcatgagatcctgtgtacaaatttccagcaccaacatacaaaatcaggtacgtctgcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 350 gcatgagatcctgtgtacaaatttccagcaccaacatacaaaatcaggtacatctgcatg 409
Query: 241 catctctacctccaatgcttggcataagggcatagataaaagaatcgttgtgcatgccga 300
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 410 cacctctacctccaatgcttggcataagggcatagataaaagaatcattgtgcatgccaa 469
Query: 301 acttcttgaattgggtagtttcataccactgagagaccctgtctcaaacaaaaatgttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 acttcttgaattgggtagtttcataccactgagagaccctgtctcaaacaaaaatgttgc 529
Query: 361 ttgcacctgatcagcaatacttcaggctctcctctgacatctacacatacctttacatat 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttgcacctgatcagtaatacttcaggctctcctctgacatctacacatacctttacatat 589
Query: 421 gtgagcacactccacatgtaaaagcgcatatgcataaatacacacaagcaaataaataat 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 590 gtgagcacactccacatgtaaaagcacatatgcataaatacacacaagcaaataaataat 649
Query: 481 tccagtccagtgggagaggttacaagagattgaaaactg 519
|||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tccagtccagtgggagaggttacaagagattgaaaactg 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
