Query= MSMg01no066_f20.b1 MSMg01no066_f20.b1 CHROMAT_FILE:
MSMg01no066_f20.b1 PHD_FILE: MSMg01no066_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:08 2005
(521 letters)
>mm_chr1_12325805_12326725
Length = 921
Score = 992 bits (513), Expect = 0.0
Identities = 519/521 (99%)
Strand = Plus / Minus
Query: 1 caggccagctttgtctgcaatgaaagatggtgcttgaaaaataagggaagggatgattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caggccagctttgtctgcaatgaaagatggtgcttgaaaaataagggaagggatgattaa 662
Query: 61 tcagaatagactggggacatcagaacttattggagccaggaagatgtgttttcttaaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcagaatagactggggacatcagaacttattggagccaggaagatgtgttttcttaaagt 602
Query: 121 agcatcaaaaccatggatcacttaaaattatgattgggagtcctttagatttaagcagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agcatcaaaaccatggatcacttaaaattatgattgggagtcctttagatttaagcagtc 542
Query: 181 cactaaaaccagtggtagtgattaccgcatgcctatagtctctttcaatttcttccaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cactaaaaccagtggtagtgattaccgcatgcctatagtctctttcaatttcttccaaaa 482
Query: 241 atgatacagtggctgaaatgcataagctattaaaactgaagagcaaacaggcagctagaa 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgatacagtggctgaaatacataagctattaaaactgaagagcaaacaggcagctagaa 422
Query: 301 tctaaagtgctaacatgccctttttaaatgggaacacatggccaactggaatatgagcgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctaaagtgctaacatgccctttttaaatgggaacacatggccaactggaatatgagcgt 362
Query: 361 gcaaaatgaatggtactaccagtgactatgaatgtggctggctgacaaatctagagccag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 361 gcaaaatgaatggtactaccagtgactatgaatgtggctggctgacaaatctagagtcag 302
Query: 421 gatgcaaactgtttagctccttgtctagcctgcctcaccataacatcattcttgagccat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatgcaaactgtttagctccttgtctagcctgcctcaccataacatcattcttgagccat 242
Query: 481 ttctcagtttcatgggtttcagcagaagcaacagacaacct 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttctcagtttcatgggtttcagcagaagcaacagacaacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_f20.g1 MSMg01no066_f20.g1 CHROMAT_FILE:
MSMg01no066_f20.g1 PHD_FILE: MSMg01no066_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:08 2005
(537 letters)
>mm_chr1_12184394_12185330
Length = 937
Score = 895 bits (463), Expect = 0.0
Identities = 517/537 (96%), Gaps = 9/537 (1%)
Strand = Plus / Plus
Query: 5 gaattcttcctca-a--tttccagacaaagtttctttataaagatcaggctggccttgaa 61
||||||||||||| | || |||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 gaattcttcctcacaggtt--cagacaaagtctctttataaagatcaggctggccttgaa 261
Query: 62 ctcacagggatctgtctatctctgcctcccaagtgctggaattaaaggcatttaccacta 121
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 262 ctcacagggatctgcctatctctgcctcccaagtgctggaattacaggcatttaccacta 321
Query: 122 tggcccagctacacataaatgtttaagcaaattacttatcaattttttatcacatagaaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tggcccagctacacataaatgtttaagcaaattacttatcaattttttatcacatagaaa 381
Query: 182 atgtataaatcatgctgagtgtattatttaatactagtaggtatgaaaaccataaaatgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atgtataaatcatgctgagtgtattatttaatactagtaggtatgaaaaccataaaatgt 441
Query: 242 cttcctcattgtggttaaacctatgatagacagatggctcattaattaagagcacttact 301
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 442 cttcctcattgtggttaaacctatgatagacagatggctcagtaattaagagcacttact 501
Query: 302 gctcttgcagaggtcttttggtttctactttaaggagttcacaatttcctgtgcctcaag 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctcttgcagagggcttttggtttctactttaaggagttcacaatttcctgtgcctcaag 561
Query: 362 atgtgcctcacttctggtttttacagtgacctctattcatgtgcacacccatacaccccc 421
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 562 atgtgcctcacttctggttttcacagtgacctctattcatgggcacacccatacaccccc 621
Query: 422 -cacacacatccccacactcacatgcctacacacaaagacacaaaacatacagccaggta 480
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 622 acacacaca--cccacactcacatacctacacacaaagacacaaaacatacagccatgta 679
Query: 481 aaagtaaaattaaaaaaaagtcaaattaaaacctgtttgaatagtatgctgagtatg 537
|||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 680 aaagtaaaattaaaaaaa-gtaaaattaaaacctgtttgaatagtatgctgggtatg 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
