BAC Information

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BAC

Clone NameMSMg01-066J10
Chromosome1 (Build37)
Map Location 95,242,378 - 95,242,614
singlet/doubletsinglet
Overlap genePpp1r7
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask
Downstream geneTmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066J10.T7 (MSMg01no066_j10.b1)MSMg01-066J10.TJ (MSMg01no066_j10.g1)
ACCAG291525AG291526
length749987
length of high quality
(start - end)
237 (136 - 372)---
definitionCHROMAT_FILE: MSMg01no066_j10.b1 PHD_FILE: MSMg01no066_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:26 2005CHROMAT_FILE: MSMg01no066_j10.g1 PHD_FILE: MSMg01no066_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCTTTCCTTTTTTCTTTTTTCCTCCCTTCTTCCCCTCCTTTTCCCTTTC
CCACATAANNATACAATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTATGAACATTT
GAATGTCTTCTACATCCAATAGTATTTAAGATACAGAGACAGCAACTGGG
AGGCCACATGGAGACAATTAACATGCCATCCTTCCCCTCCGAGAACTTGT
AAAGAGTTGACAAGTGTCAACTGAAATCTGGATCATCTACCATGGGAAAC
ACTAATGACACCAGATACAGAAGTACCTTCCAAGAGGCTCTCACATCTGA
TGTGATGACCCTTCTCACATCTCACTGTTTTTTTTTCTGCCACATACCTT
CATTGATGTCTCACTATCCATTTGGTCAACATAAATGGTTAAATTTTCAG
GCCCACATTCCATAAGATATTAAGACTACCTAAGATGATATTGTGCCCAT
CATTGATACGATAACTATAATGTCTCAAAAAATGGTAGATTTTTTACTCA
ATCTGCTCGTTGTTATATATCCATCGCCTATAGCTCATCCTCGCCATGCC
TTTCGCACTCCTACACATATCTACTTTGACCTCATTTATTTAAATTTCAT
GTACCCTTCGTTTTTTTTCCTCCTGTTCTTCCCTCCCTTTCCTTCATTAT
TCCCCTTTTTTATATCACAACCTACTTTCATTTCTCCTCCCCTTCCCCG
CCCCCCCCCCCCNCCCCCCCCCCCCNCCCCCTCCCCCNCCCCCCTCCCCC
TCCCATCCACTAACTCTCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCCAGAGAAGGACGCGGAATTCTGTCATTTCTCTCAGAATACTC
CTCAGCCTACTAGTATTAAGATATCTATCTGTTCTTAATCTTTTAAGCTC
ATCTTTCTGCGCGGATATATCTATAGTATAGGAGGTTCTTGATCTCGTGT
TTTCCTAGTGTTATGATGTGTGTCTCACTCACCATTTTTCATCGCTCCTG
TTTCGTAATCTGTCGTCTTTCTTCATGGCATTCTTGCGACGTCCTTCTCG
ATCGCCCAATTTTTTGCATCTTTCGTTTTGTTTTCCTGCGCCCGGCAAGC
CCGTCTTCATAATATCTAACCATTTCCCTTGTACATGATTGCCCCTTGTT
GAATGTGTTCTTTCCCACTACTGTTTATCTCTTCGTTTCTTTCTGTCATT
CTCTCCACTCATGTTACTTTTTGTTGTTCACATTATCGACCATCTCTTAC
ACGTTGTTGTCTTATATATCTCATTTACATCTTCTCCTTCACTCCATTTT
GTTTTTATTTTTCGACTCGTGTGTTGTTACTTTCACTTTAGTCCTTCCGT
CTTTTGTTTACCGTACTATTTGTTTTCCCCTTAGTGCCCCTTTATCTCCT
TTTTACACTCTTACGGTTTAGTTTTGTCCTTCCATTTTTGTTCCCCTATT
AATATCTCTGTACTCTTAACTTAAGTCGCTTGATCTTACAACACTATTTC
AATAACACATTACTTGTAGATATATAAAATAAGGTGCCTTAGTAACATTA
AATACATGTTGCTCAAACCTCTCACTTTATTGCTATTTTCCCAAGTCATA
GCTCACTTAAATTAGCTTTCCCAATTATTTCTATCATCTTTTGTTCACCT
AGACTACATCCATATATCTCTGTTCTCTTAACTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_j10.b1 MSMg01no066_j10.b1 CHROMAT_FILE:
MSMg01no066_j10.b1 PHD_FILE: MSMg01no066_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:26 2005
         (237 letters)



>mm_chr1_95242178_95242814
          Length = 637

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttatgaacatttgaatgtcttctacatccaatagtatttaagatacagagacagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 437 agtttatgaacatttgaatgtcttctacatccaatagtatttaagatacagagacagtaa 378

                                                                       
Query: 61  ctgggaggccacatggagacaattaacatgccatccttcccctccgagaacttgtaaaga 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 ctgggaggccacatggagacaattaacatgccatccttcccctctgagaacttgtaaaga 318

                                                                       
Query: 121 gttgacaagtgtcaactgaaatctggatcatctaccatgggaaacactaatgacaccaga 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 317 gttgacaagtgtcaactgaaatctggatcatctacaatgggaaacactaatgacaccaga 258

                                                                    
Query: 181 tacagaagtaccttccaagaggctctcacatctgatgtgatgacccttctcacatct 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tacagaagtaccttccaagaggctctcacatctgatgtgatgacccttctcacatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)