Query= MSMg01no066_p11.b1 MSMg01no066_p11.b1 CHROMAT_FILE:
MSMg01no066_p11.b1 PHD_FILE: MSMg01no066_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:56 2005
(582 letters)
>mm_chr1_181436431_181437412
Length = 982
Score = 878 bits (454), Expect = 0.0
Identities = 536/592 (90%), Gaps = 47/592 (7%)
Strand = Plus / Plus
Query: 6 gaattctgctgtaccttccaggcccactctaaacacacaagtacaactcaaaaccatgca 65
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgctgtaccttcaaggcccactctaaacacacaagtacaactcaaaaccatgca 265
Query: 66 gagcctgctatctttcattacttggtcagtgctgtgactgagcctgtgtgtgctgagctc 125
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gagcctgctacctttcattacttggtcagtgctgtgactgagcctgtgtgtgctgagctc 325
Query: 126 gacccctgggctacactctgagcgccacacattttattacacacacgcgcacgcacacgc 185
||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 326 gacccctgggctacactctgagcgccagacattttattacacacacg------------- 372
Query: 186 gcacacgcgcacacacacacacacgcactgttccacaacctgattcatcagtagtgtgtc 245
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 -------------------cacacgcactgttccacaacctgattcatcagtagtgtgtc 413
Query: 246 agccacatctgtacaagcagctctgcctcagtgttaacagtgaaacagtattccataatc 305
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agccacacctgtacaagcagctctgcctcagtgttaacagtgaaacagtattccataatc 473
Query: 306 caaacaaaccggtttaacccgcctaccaaaatgctacactacataccattaagtatctgg 365
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 474 caaacaaaccggtttaacccgcctaccaaaatgctacactaaataccattaagtatctgg 533
Query: 366 ccctctgggaagaacttttgtcaagaactacaactttcatcactcaagtttctgtttagg 425
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 534 ccctctgggaagaacttttgtcaagaactacaactttcatcgctcaagtttctgtttagg 593
Query: 426 tttttcaaatctttctgtatatttttgtgttatttatttatttatttattt--------- 476
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tttttcaaatctttctgtatatttttgtgttatttatttatttatttatttatttattta 653
Query: 477 ---tagagatatggtctcaacgctagccatctgactccaaatcagataactacctgcatc 533
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 654 ttttagagatatggtctcaacgctagccatctgactccaagtcagataactacctgcatc 713
Query: 534 tacatcccaagattaaatggctagtttttatttttt--atttattt-ttttt 582
|||||||||||||||||| |||||||||| |||||| |||||||| |||||
Sbjct: 714 tacatcccaagattaaatagctagtttttttttttttaatttatttattttt 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_p11.g1 MSMg01no066_p11.g1 CHROMAT_FILE:
MSMg01no066_p11.g1 PHD_FILE: MSMg01no066_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:56 2005
(576 letters)
>mm_chr1_181580231_181581206
Length = 976
Score = 984 bits (509), Expect = 0.0
Identities = 533/545 (97%), Gaps = 7/545 (1%)
Strand = Plus / Minus
Query: 39 aacttaaggcaggtaacagttttcaccaggtcctggaacacagagggtctcagctaatat 98
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 976 aacttaaggcaggtaacagttttcaccaggtcctggaacacagagggtctcagctaatgt 917
Query: 99 tggtttccccttcttaactcctgcagcctttgctaccaacagacacagcccaaacgtgta 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 tggtttccccttcttaactcctgcagcctttgctaccaacagacacagcccaaacgtgta 857
Query: 159 ccctgcttgtattctttaggaagaatgtttgttggccttgttgccacaaaatttcagatt 218
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 856 ccctgcttgtattctttaggaaggatgtttgttggccttgttgccacaaaatttcagatt 797
Query: 219 tcaggaggccaagggacatgttgcctagcactgagttcagcacacagtcggcaccgaaca 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tcaggaggccaagggacatgttgcctagcactgagttcagcacacagtcggcaccgaaca 737
Query: 279 aacaaatctctgtgccagacaaagggacagaaaaagcacagaccttgacacatc------ 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aacaaatctctgtgccagacaaagggacagaaaaagcacagaccttgacacatccacccg 677
Query: 333 -cagactaatgttggagaacatcaaccagttcttcccgaaatgttcctgggaacagtggc 391
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tcaggctgatgttggagaacatcaaccagttcttcccgaaatgttcctgggaacagtggc 617
Query: 392 cccatggctgctaatggggaaggaacggacacagtcacctacacaacagagtgagtggaa 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cccatggctgctaatggggaaggaacggacacagtcacctacacaacagagtgagtggaa 557
Query: 452 aacctttctcctgcctgttggttacttttctgtggctgtaataaaatgctgccaccaaga 511
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aacctttcttctgcctgttggttacttttctgtggctgtaataaaatgctgccaccaaga 497
Query: 512 gccagttatagaagagcgagggattttgttgcttgctttggggctgatgtttccagaggg 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gccagttatagaagagcgagggattttgttgcttgctttggggctgatgtttccagaggg 437
Query: 572 ttatc 576
|||||
Sbjct: 436 ttatc 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
