BAC Information

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BAC

Clone NameMSMg01-067A02
Chromosome1 (Build37)
Map Location 11,950,241 - 11,950,551
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneC030045D06Rik
Downstream geneLOC665262, LOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067A02.T7 (MSMg01no067_a02.b1)MSMg01-067A02.TJ (MSMg01no067_a02.g1)
ACCAG291845AG291846
length696722
length of high quality
(start - end)
316 (45 - 360)214 (76 - 289)
definitionCHROMAT_FILE: MSMg01no067_a02.b1 PHD_FILE: MSMg01no067_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:59 2005CHROMAT_FILE: MSMg01no067_a02.g1 PHD_FILE: MSMg01no067_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACACAGTACTCTTCCTAAAATCACACTTGAAATAATTTTAAACTTA
GTACTTAGCTCTTGTTTAAAACCTTACCAATCCATGCATCTAAACAACGT
GTTCATCACAGAAGTCCTCTCTAACCCAGGGACTCCTACCCACTCTGGGT
GACTGTTCCCTTCTTTGACCACCTCCTTAATATGTTGTCTCAAGAAATGG
TGTAACTAATGTTACAATTGTGTATCTGTATCTGTCCACAGCAGTAGAGA
AGAGTGAGCAGATAACCTGACCTGTCTCTGCATCTGCAGGCCACAAAGCC
CAGTAAACATTATTTTTCATACACACACTCACTCACCACACACACACACA
CACATTTTTAAGTCCATAATGATGGATGTTTGGATGGTAATCTGGTCTGT
ACAACTAGGCTCCTGGGATTTATGTAGGAAGATATTAACTGTTTCTTACT
TGACATAAATATGTCCCACACTGTCTGATTTGTGAAACTGTAGCCTTTTA
TTATACTCAATGCATTTTATACATTTCTCTGTATCAGTTCTGCTGTCGTG
CACCATATCCCCCCCTTCCCTTTACACGCACGTGGACTGCTAACATCCAC
GGTTCACGTGCGCATCTTTTGTCAACTCTTTTCTCTTTTCATTCCA
CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAA
GTCAAAACAACCCTGAGATTCCACCTCACACCAGTGAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGTATGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGCCTGGTGGTTCCTTACAATATTGCACATAGTACTACTGGAGGATTC
AGCAATACCTCTTCTGTGTATACACCCAGAAGATGGTCTCTCTGTCATTA
ACGACCCTTGCTCTCTAATCTCATAGCCTTTTTACTTTTAACAGTTCGAC
TTTGGTTATGACCCCTATTCCCCCTTCCACTAAGAACTGCCTTCCTGTAT
ATGTGGTCCCTTCTTCCCAATTGAAGCTATCCCCCCTCTTTCAATAAAAC
ATTGTTTTCTCCGTAATTCCTTACCCATATGGTGTTGCATCTGGATGGCC
TCACCCCCTGAATGTGGGTATCATAATTTCCTATAAGTGTACTTCCCAAC
TCTCTAGCAATCACCCGGTAACTGGGATTCTTACACCTTCATCCCCCTTG
GGTTTTTTCCACATTTTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_a02.b1 MSMg01no067_a02.b1 CHROMAT_FILE:
MSMg01no067_a02.b1 PHD_FILE: MSMg01no067_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:59 2005
         (316 letters)



>mm_chr1_11950037_11950752
          Length = 716

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacacagtactcttcctaaaatcacacttgaaataattttaaacttagtacttag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcacacagtactcttcctaaaatcacacttgaaataattttaaacttagtacttag 456

                                                                       
Query: 65  ctcttgtttaaaaccttaccaatccatgcatctaaacaacgtgttcatcacagaagtcct 124
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 455 ctcttgtttaaaatcttaccaatccatgcatctaaacaacatgttcatcacagaagtcct 396

                                                                       
Query: 125 ctctaacccagggactcctacccactctgggtgactgttcccttctttgaccacctcctt 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 395 ctctaacccagggactcctacccactctgggagactgttcccttctttgaccacctcctt 336

                                                                       
Query: 185 aatatgttgtctcaagaaatggtgtaactaatgttacaattgtgtatctgtatctgtcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aatatgttgtctcaagaaatggtgtaactaatgttacaattgtgtatctgtatctgtcca 276

                                                                       
Query: 245 cagcagtagagaagagtgagcagataacctgacctgtctctgcatctgcaggccacaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cagcagtagagaagagtgagcagataacctgacctgtctctgcatctgcaggccacaaag 216

                      
Query: 305 cccagtaaaca 315
           |||||||||||
Sbjct: 215 cccagtaaaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)