BAC Information

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BAC

Clone NameMSMg01-067B23
Chromosome1 (Build37)
Map Location 12,493,462 - 12,493,747
singlet/doubletsinglet
Overlap genenone
Upstream geneA830018L16Rik, LOC665262
Downstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2, LOC665341, LOC100039812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067B23.T7 (MSMg01no067_b23.b1)MSMg01-067B23.TJ (MSMg01no067_b23.g1)
ACCAG291935AG291936
length711799
length of high quality
(start - end)
285 (65 - 349)45 (73 - 117)
definitionCHROMAT_FILE: MSMg01no067_b23.b1 PHD_FILE: MSMg01no067_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:08 2005CHROMAT_FILE: MSMg01no067_b23.g1 PHD_FILE: MSMg01no067_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATATTTGCGGCGCTATAGACTCCTATAGTTACAGATCCGCGGAATTCA
GCGCAGTTTACGCTAGACTGGGTGACCACATTAAACTGAGTGAGAATTCA
TGCAAAGAGAAATAACTCAATGATAAGGAAAACCCAGAGATGTGACAAAC
CTGAGAGGCTGTGTTGGCATCAACAGACAGAAAGAAGGTCAGTATTTGGT
GAATAAAAGTCAGTGACCTAGAGAGAAGTGCCCAGGGGAAATGACAGGCC
ATGGGGGCAGCCCATAGCTAGTGGGAAGTCAGTTCCTGTGGGATTCTGTA
GGATGCAGTAAGAAGTATGAGTTTTACTATAAATGCAACACTGGGTGGCT
TGACTCTGTTTTTTACCTCCTTGCCTTACATTTCTCAGAGGTGCCACTAC
TTATTAGCTTTGCCTAGAATTCTAATAAATGGTTTCTGAAGGTCTATTCC
CTATCTATCCTACAGCCCTGGATAGATAACTGCTACAGTGAACAAGGAAG
TCCATTGGGGTGGAGGTAAAGGAGACAATTAAACAGCTCAGTAAACTTGG
AGCCAGGAACATTGGGTATATTATCCATACCAGGNAGGATGTTTGAGGAT
GGTGTGGTGCCCCCTTTATCTGAGGAAAGGACTGACGATAGAGACTATTT
GATGATGGCGAGTGTGGGCAGAGGTGACTAGGATGGTTGGTTTCTGAGTG
TTGTGAAGTGG
GATGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTTCTGTTTTGATCAGTTTTCAGATT
TTAAAACATACATTTATTTATTTGCCCCCAAACATTAGCTGAGTATGCAT
TAGTGAGTGACAAGCCATTTATGAAGTGTTGTGCACCATGGAAGGAGCCT
CTTACCAAAGTGCTAAAATTTTCAAGGTGGATCGAAGAAATTACCTTGTC
TTTGGGAGCAACATGGAGTCCAGAGACCTGGAATACTTATGCCTTTCTAT
TGTCATTTCTAGTCTTGTTCTTTTTTCCCTGTTCTTCCTCTTGTCTCTCC
CCTTCTCCTCCTCTCCTCGTCCTCCGTTTCTCTTTTTTTTTTTTTTTCCC
CCCCCCCCTCCCTCCTAGGTTTATTGCTCTTTACGGTCCCTCTAGGTTTC
CATCACATTAAAAAAAATAAAAAAACCTTGTGGGGGTGTGGGAGTGCACT
CATTTGCTTCCTCCTCCTTTTTCGTTTTACCAGTATGTTTCCCCGTTTTT
CGCTTCTTTCCTTCTCCCGCCCTCTTTGTTATTGATTCTTTTCACTCCTG
TGTTCCTTGATATTTTGTCCCCTTTTTGTTTTTATTATGCTACTCCGCAC
TCTTATTCCGCCTTGCGGTTTTTTCCGCGTGTCTCATCTGTGTTGCGTTC
CTCTGCCTCTNCCCCTTTTCTCCTGTCTCCCTTCCCCCCTTTTTGTGGCC
TTTTTCGCGTTTTTTGTTTCCTTTCCTGCCGTCTGTCTTCTCCGCCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_b23.b1 MSMg01no067_b23.b1 CHROMAT_FILE:
MSMg01no067_b23.b1 PHD_FILE: MSMg01no067_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:08 2005
         (285 letters)



>mm_chr1_12493262_12493947
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 282/286 (98%), Gaps = 1/286 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactgggtgaccacattaaactgagtgagaattcatgcaaagag-aaataactcaatga 59
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 201 agactgggtgaccacattaaactgagtgagaattcatgcaaagagaaaataactgaatga 260

                                                                       
Query: 60  taaggaaaacccagagatgtgacaaacctgagaggctgtgttggcatcaacagacagaaa 119
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 taaggaaaacccagagatgtgacaaacctgagaggccgtgttggcatcaacagacagaaa 320

                                                                       
Query: 120 gaaggtcagtatttggtgaataaaagtcagtgacctagagagaagtgcccaggggaaatg 179
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggtcagtgtttggtgaataaaagtcagtgacctagagagaagtgcccaggggaaatg 380

                                                                       
Query: 180 acaggccatgggggcagcccatagctagtgggaagtcagttcctgtgggattctgtagga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggccatgggggcagcccatagctagtgggaagtcagttcctgtgggattctgtagga 440

                                                         
Query: 240 tgcagtaagaagtatgagttttactataaatgcaacactgggtggc 285
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagtaagaagtatgagttttactataaatgcaacactgggtggc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space:   186852
Effective search space used:   186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)