BAC Information

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BAC

Clone NameMSMg01-067F10
Chromosome1 (Build37)
Map Location 130,065,595 - 130,065,876
singlet/doubletsinglet
Overlap geneR3hdm1
Upstream geneMgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, LOC667109, LOC100042111
Downstream geneUbxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067F10.T7 (MSMg01no067_f10.b1)MSMg01-067F10.TJ (MSMg01no067_f10.g1)
ACCAG292097AG292098
length712680
length of high quality
(start - end)
32 (155 - 186)286 (75 - 360)
definitionCHROMAT_FILE: MSMg01no067_f10.b1 PHD_FILE: MSMg01no067_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:25 2005CHROMAT_FILE: MSMg01no067_f10.g1 PHD_FILE: MSMg01no067_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTCCTAGTC
ACTCCCATTCTCGGGGTGTAATAGTGGGGTGATGGGCAAGCAACAAATCA
GGAGCTGCCACGCCATATCAGGTGCTGAAACGTCACGCTGCGGATTATAA
AAGCAGCGCCATTTTCCCGGCTCGGAATCTTCCTGAGAAGCAAGCAATAA
AGCTTTTGCCACGGAAGATTCTGGTTTGTTGCGCCTTTCTTGACGGCCGA
GCGTTACGCATTATGTACCAATAAAGCGCACAGAGAGAATCAGCCTCCCC
ACATGTTGTCCCCCAGAACGGCACCTAACGAATAAGGCAATAACTAAGAA
CTTTTTTTTTTTATGTAATGCCCCCCCCCCCCCTATAGCAGGTTTTGTGT
GTGTTGTAAATAGTGATCCTTTTACTCCTCTCTAAATACAAAAAAAAAAA
AAAATAAGGTGTGGTGGGACCGGTTGTATTTCCTCCCCCAATTGTCGATA
TTAACATTTCTTTCATTATTTTCCACCCGACTCTTTCCCTGCCCATATAA
AATATCTTCTTTGTTTTATTTTACGTATAAATACATCTAATTATTTTACT
CTTATCTCTCTTCCTTTCCTCTTTCTTATTCTTTCATCTCCATCCCCTTT
CCAACTTTCCCTTAATTTTAATCTCTCCCTCAATTTTTTACTTCTCTCCT
TTTTTCTTCTTT
TTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTATTCCTGAAAATGCCTAAAGAATA
GGAATGATTCTCAAACCATGACAATATGTATAATGCAAAGATAAATACAT
CTGTATTTAGTAGACAAATGTCTTAGTCCTAAAAACGGAAAATTACTGGT
ATATTCCTTCTATCTGCAATCTTATCCTAACATTCAAAATCAATAATTAA
AAAAACATATATAGCAAGATTATGGTAGTCTAGACACAATGTAAACCTTA
TAAATTTATTTTTTACCTGTTTATTGCTTTTTAATGTATTTACTAAAAAT
TCATGTATATTTATTTCAGCCCCCCCCCCCCGCATTCTTGGCTGGAATCT
AAAAAACAACAACTCCTTTACCCAAAATAAAATTGTTTTAGCGTGGGTCC
CTTTCCCTTTTGTACATTATGTCTATATTACTTAAAATGAGATGTCCCAT
GAAGAAAAAAATGAAGCAGGAAAATGCATTTTATGATGAAGACTGATAAC
CTCTATTTGTCAACTTGCATATATTTTTTCTTGACATGGTCTGTTATAAC
TGCATGTACACACACATTCTCAAAAAATCTTTATGTCTGAACTTATTTAA
ACCCATTTCTTTATAAATCCTCATGGACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_f10.g1 MSMg01no067_f10.g1 CHROMAT_FILE:
MSMg01no067_f10.g1 PHD_FILE: MSMg01no067_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:25 2005
         (286 letters)



>mm_chr1_130065395_130066079
          Length = 685

 Score =  509 bits (263), Expect = e-148
 Identities = 278/285 (97%), Gaps = 5/285 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattcctgaaaatgcctaaagaataggaatgattctcaaaccatgacaatatgtataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 482 ctattcctgaaaatgcctaaagaataggaatgattctcaaaccatgaaaatatgtataat 423

                                                                       
Query: 61  gcaaagataaatacatctgtatttagtagacaaatgtcttagtcctaaaaacggaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gcaaagataaatacatctgtatttagtagacaaatgtcttagtcctaaaaacggaaaatt 363

                                                                       
Query: 121 actggtatattccttctatctgcaatcttatcctaacattcaaaatcaataattaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 actggtatattccttctatctgcaatcttatcctaacattcaaaatcaataattaaaaaa 303

                                                                       
Query: 181 acatatatagcaagattatggtagtctagacacaatgtaaaccttataaatttatttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acatatatagcaagattatggtagtctagacacaatgtaaaccttataaatttatttttt 243

                                                        
Query: 241 acct--gtttattgctttttaatgtatttactaaaaattcatgta 283
           ||||  |   |||| ||||||||||||||||||||||||||||||
Sbjct: 242 acctggg---attgttttttaatgtatttactaaaaattcatgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space:   187252
Effective search space used:   187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)