BAC Information

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BAC

Clone NameMSMg01-067J08
Chromosome1 (Build37)
Map Location 168,461,683 - 168,461,962
singlet/doubletsinglet
Overlap genenone
Upstream geneSacy, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601
Downstream geneEG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067J08.T7 (MSMg01no067_j08.b1)MSMg01-067J08.TJ (MSMg01no067_j08.g1)
ACCAG292284AG292285
length698689
length of high quality
(start - end)
64 (47 - 110)280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no067_j08.b1 PHD_FILE: MSMg01no067_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:44 2005CHROMAT_FILE: MSMg01no067_j08.g1 PHD_FILE: MSMg01no067_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTAAATTCC
AAGCTAATAACATTTCAATTGCCCCACAGCAGGCCTCATACTTCTGAAAA
GACATTCTCATCCCACCAGGTCCTTTTAGATGTAATCACACCAGGTCAAT
TAGAATCGGCTGAAGCATTTTTGCTTTTGTCCTACATTCACTAATGTTTT
ATTTTAGCTTTCATGGTTGTGGTCTGAAATTCTTGCTAAGTACTCTTCTA
AGAACCATGATTTCTAAAGGCTGATGGGCCTCAGACTCATCCAGAGAGTT
TGCCAAATTTCTTTTTCCCATGCTCTTCCCCAGATGCTGTGACTAGGTAA
TTTTATTTTTGATTCCCCCCCCCCCCCCTCTAACAAGTTTCCTTGGTGAC
AGATTATGTTGCCCCCTATATAAACAAAAAAAATAAATCTCTGCCCTTCT
GCAGATGTGGTCTTGTGTATTATACTCTTTTCTAACTCCTTCTCCATGCT
CTTTCCGAAATAATTTCCTTCTTCGAACCTCTCACGCTTTGTACTGCATA
TTTCCCACTCTTTCGCTTTAACCGGAATATTCCCCTCTATATTTTTGCAT
TTTTTTCTCTATTCTCCCTCTTCTTTTTCCCCCTAACACTGGCCCTTTTT
CTATCTTTTTTCTTTCCCTTCCTTTTTTCTCCCCTCTAGTTCTTACCA
GCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTTGTTACGTAGGAGCTGTATTCC
TACTTGAGGCAAAGAAAGGCTGAAACCAAATGAAGCAGAAGTTTATGAGA
AAAGACAGAAGGAATAATTGCTTCTGCTAACCACAACTCTTTTGATGTCT
CTGGGGACATCAGAAGCCAGAGGAAGTGCAGTCCAATTCACAGTCTTTGC
AAAGGAAGTGTTATCCTATCCCTGGATTGAGTAACGTCCACTTTGTGGTT
GGTTTTTCTGCTTTTGATTTCTCGGGCTAAGTTGATTATTATCAACAGAG
TGGGAGACTGATTTTTTTCTTCCACCCGCCCGCCCTTGGTGATCTTCCTG
TTGGATATTCTCTCCACCTCCCCAGAAACAAAAAAGATGACCCTCTTTGA
GGCTATTTTACAAGCCTGTCGTCTCTCCACACTCTTACTTGTAGAGCAGG
AGTTTCACACCTACTACTCGACCGTCCCACTCACTTTTATTGAAATAAGC
GTTCTCTGTCCATATAAAAGTGAAGCGTTTCCCTATATCTTTTCACAATT
TCTTTTCTGAAGGAGAATATTCTTCATTTCCCTGCCCCTGGATATTCTAT
TATTCATATTTCTTTTACCAATTTTTTTAATAATGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_j08.g1 MSMg01no067_j08.g1 CHROMAT_FILE:
MSMg01no067_j08.g1 PHD_FILE: MSMg01no067_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:44 2005
         (280 letters)



>mm_chr1_168461483_168462162
          Length = 680

 Score =  503 bits (260), Expect = e-147
 Identities = 275/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttgttacgtaggagctgtattcctacttgaggcaaagaaaggctgaaaccaaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 201 attttgttacgtaggagctgtattcctacttgaggcaaagagaggttgaaaccaaatgaa 260

                                                                       
Query: 61  gcagaagtttatgagaaaagacagaaggaataattgcttctgctaaccacaactcttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagaagtttatgagaaaagacagaaggaataattgcttctgctaaccacaactcttttg 320

                                                                       
Query: 121 atgtctctggggacatcagaagccagaggaagtgcagtccaattcacagtctttgcaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtctctggggacatcagaagccagaggaagtgcagtccaattcacagtctttgcaaag 380

                                                                       
Query: 181 gaagtgttatcctatccctggattgagtaacgtccactttgtggttggtttttctgcttt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagtgttgtcctatccctggattgagtaacgtccactttgtggttggtttttctgcttt 440

                                                   
Query: 241 tgatttctcgggctaagttgattattatcaacagagtggg 280
           ||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 441 tgattcctcaggctaagttgattattatcaacagagtggg 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)