BAC Information

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BAC

Clone NameMSMg01-067L08
Chromosome1 (Build37)
Map Location 42,569,450 - 42,569,686
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383634, LOC666582
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644, Nck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067L08.T7 (MSMg01no067_l08.b1)MSMg01-067L08.TJ (MSMg01no067_l08.g1)
ACCAG292378AG292379
length731688
length of high quality
(start - end)
218 (30 - 247)237 (74 - 310)
definitionCHROMAT_FILE: MSMg01no067_l08.b1 PHD_FILE: MSMg01no067_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:53 2005CHROMAT_FILE: MSMg01no067_l08.g1 PHD_FILE: MSMg01no067_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCTTTTTTTTAG
CTCTGACCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTT
CTTGATTTCCCACATATATTGGATATTAGTCCCCTATCCGATTTGGGATA
GGTACAGATCCTTTCCCAATCTGTTGGCGGCCTTTTTGTCTTATTGACGG
TGTCTTTTGCCTTAAAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTCA
ATTCTCGATCTTACTGCACAAGCCATTGCTGTTCTATTCAGGAATTTTTC
CCCTGTTTCTAAATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTT
TTTTTGTCTCTGCCCCCCCTCCCCCGCTCCTTGATCCACTTAGATTTGTA
CCCACTTCCCCCAGATATGAAATGAAAAATATTTGCAGTCTTCTGCGTGA
TTTGCACCAGGTCGTGTCTTCTTTATTTGTTGTAAATGCTGTCATTCCTT
CCACAGAATGCGTTCTATATTTTCTTTTTTTACCATTTCACCGCCCTCAA
TTCGTGTATTTTCCATTTCCTTATCTCTTTGTTCTTAATTACATCGCAAT
TATTTTGTCCGTCATCCATTTTATATTTTTCTTCGTTTTTTATTTTCCTC
TCTTAGCATCCGTTCATACTTATTCATTCTATTTTACTATGGCCTTACAT
TTATCTTCCTCCGCTCTCTTTTTCTCCCCTG
TCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAATTGATGAGGGTTTTAAATCTCT
TAAGAATGTTTATAGTCCTGCTTGCTTGTGGCTCTCTCCGGGCAAACCCT
GCAGCATCGAGGGTAAATTCCACTCCGTACTCTCTGCATTCCATTATCCA
GGCTACAGCTCTGCTTTGCCTGCGATTGGTTGGGCTTGAACCAGAGTTCA
TGTCTACAACATCATCCTCAAGACACGGGGGCTCAAGGCGGCTTGCTGGC
CCTTGTTGTGGAGAATATTTATTTTGTACTGTGTACTGAAGCTGCCAAAA
ATGTGTGTTTTTTTTATTGCCCCCACCCCCCCGTTGGTATTAGATTACTT
AGGGATGTGTCTCTTGCCACCACAAAAGAAAAACTGTTTATATGAGGGGT
GTATATTAACATTTTCGACTTTGGTTACTTCATGACCTTCGTTTTCCATG
GGTGTGAATATGCAATGATTATCATGCACAATTGTCTTCCATTATAAATG
TCTTTTTTTAAAAAATGTATCTGTGCTTTTTTGTGTATAAACCCTGTGTC
TTTATCCTTTGTCAAATATAAACAGCTTGTGTTCACGGTATTTTCTTTTT
TTCTAATTTTGTCTGTTCTCTCGGGTGGTAATATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_l08.g1 MSMg01no067_l08.g1 CHROMAT_FILE:
MSMg01no067_l08.g1 PHD_FILE: MSMg01no067_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:53 2005
         (237 letters)



>mm_chr1_42569250_42569886
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataattgatgagggttttaaatctcttaagaatgtttatagtcctgcttgcttgtggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cataattgatgagggttttaaatctcttaagaatgtttatagtcctgcttgcttgtggct 378

                                                                       
Query: 61  ctctccgggcaaaccctgcagcatcgagggtaaattccactccgtactctctgcattcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctctccgggcaaaccctgcagcatcgagggtaaattccactccgtactctctgcattcca 318

                                                                       
Query: 121 ttatccaggctacagctctgctttgcctgcgattggttgggcttgaaccagagttcatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttatccaggctacagctctgctttgcctgcgattggttgggcttgaaccagagttcatgt 258

                                                                    
Query: 181 ctacaacatcatcctcaagacacgggggctcaaggcggcttgctggcccttgttgtg 237
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctacaacatcagcctcaagacacgggggctcaaggcggcttgctggcccttgttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)