BAC Information

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BAC

Clone NameMSMg01-067M20
Chromosome1 (Build37)
Map Location 40,471,682 - 40,471,844
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1, Il1rl2
Downstream geneIl1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067M20.T7 (MSMg01no067_m20.b1)MSMg01-067M20.TJ (MSMg01no067_m20.g1)
ACCAG292449AG292450
length711714
length of high quality
(start - end)
163 (69 - 231)32 (69 - 100)
definitionCHROMAT_FILE: MSMg01no067_m20.b1 PHD_FILE: MSMg01no067_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:00 2005CHROMAT_FILE: MSMg01no067_m20.g1 PHD_FILE: MSMg01no067_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTTAAGTATATTCAGGTCAGTGAGTTAGTAGCCACAGCTATAGCCACCC
AACTCTAATTTTAAAAAAGCGTTCTTTGTACAGGGTGTCAGTACTTGTTT
CTCAACAGTCTTCTTGTAAGTACCTCATTTGTATTGATATTGCAGATCTA
GGGGTGGAAAGACTACTTTCCTCTGCTAAGTAGAAGAGTCAGGGACTTCC
ACGCTGGGTTATCACTGCACAGTATGATATGTTGCTGGACCCTCTAGGAC
TTGGGTACTTTGTAACTGTATCCTTCATCAGCAGCTCTAAGGACCACTAT
CTCTTTTTCATCAGCCCTCCTCTCCTCCATGGAGATTAGAATCTCAAGTG
CATTCTTGCACCCAGCTAAATTTGTAGATCATGTATAAATTCATGCTGAG
AGATATTTTTTGTTATCTACTTATTTTTTTCATTAGCTAATGAATTAACT
ACTTTAACTAACATCCCGAGTGATTGCCTTCTCTCCCCACCTCTCCTCTC
AGGCCCTTCTTCTATTTCTATTCCGTCCTCTATTTCTGGGAAGATATGAC
TGATAGACTTGTCAGCTGTTTTCATTACCTTTGATACAAATGCGATAAGG
GATTGAAAAACGGCTGTGATGCTTGCGCAGAGGGAATCTTTCTTTTTCTT
TTTCCTTCCCA
GCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CTTGAAAAAATGTTCCACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTACT
CCATTGTTGGTGGGAGCGCAGGCTTGTACAACCACTCTGGAACTCAGTCT
GGTGGCTCCTCATATTACTGGACATAGTACTACCGGATTATCCAGCAATA
CCTCTCCTGGGCTTATACCCAGAAGATGCCCCATCTGGTAAGAAGTACTC
GTGCCCCACTCACGCCCATAGCACTCTCACTTACTTTTAGTCGAAGCCGC
ATCGACCTTATATGTCCCTCCCCTTATGACTGCACTCCGAAAATGTGGTA
CATCTACTTAATGTATGTACACTCTATTACCAACCCGAACGAATTCCATG
AAATTCTTTAGTCAAATGTATGGTCTTGCAAGTCATCATCCTTACCTAGG
TTACACTTTTCCAATCGTCTTCTCCCTCCTCTGTTTCCTCTGTCCATCGG
CTTTTATTCCTTCCCCTTACCTTTTACCCCACCTTTATCTTCCTTGTTTT
TCTCTTTCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_m20.b1 MSMg01no067_m20.b1 CHROMAT_FILE:
MSMg01no067_m20.b1 PHD_FILE: MSMg01no067_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:00 2005
         (163 letters)



>mm_chr1_40471482_40472044
          Length = 563

 Score =  300 bits (155), Expect = 3e-86
 Identities = 161/163 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgagttagtagccacagctatagccacccaactctaattttaaaaaagcgttctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgagttagtagccacagctatagccacccaactctaattttaaaaaagcgttctttg 260

                                                                       
Query: 61  tacagggtgtcagtacttgtttctcaacagtcttcttgtaagtacctcatttgtattgat 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagggtgccagtacttgtttctcaacagtcttcttgtaagtacctcatttgtattgat 320

                                                      
Query: 121 attgcagatctaggggtggaaagactactttcctctgctaagt 163
           ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 attgcagatctagggttggaaagactactttcctctgctaagt 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)