Query= MSMg01no067_o23.b1 MSMg01no067_o23.b1 CHROMAT_FILE:
MSMg01no067_o23.b1 PHD_FILE: MSMg01no067_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:11 2005
(287 letters)
>mm_chr1_34428426_34429113
Length = 688
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%), Gaps = 1/286 (0%)
Strand = Plus / Plus
Query: 1 tacagggcaaggaccagagaggtttggggcacagaaacatctgtcctc-agggaccagtg 59
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tacagggcaaggaccagagaggtttggggcacagaaacatctgtcctcaagggaccagtg 260
Query: 60 ggcaccacccttctgaaacacaaatgtgtttaggcaactcattcaggaatctctctgtgg 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaccacccttctgaaacacaaatgtgtttaggcaactcattcaggaatctctctgtgg 320
Query: 120 tctggtggttaggtttcattatgcatacaggattgattaactcagtggccatggggactg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggtggttaggtttcattatgcatacaggattgattaactcagtggccatggggactg 380
Query: 180 aataccttctctagcctctctctcttcactggaggtctcaagaagtctcaaagtgtattt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataccttctctagcctctctctcttcactggaggtctcaagaagtctcaaagtgtattt 440
Query: 240 atttagcagtaacagagataacaaactgacctttccccctactccc 285
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttagcagtaacagagataacaaactgacctttccccctactccc 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space: 188762
Effective search space used: 188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no067_o23.g1 MSMg01no067_o23.g1 CHROMAT_FILE:
MSMg01no067_o23.g1 PHD_FILE: MSMg01no067_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:11 2005
(286 letters)
>mm_chr1_34573070_34573755
Length = 686
Score = 514 bits (266), Expect = e-150
Identities = 281/286 (98%)
Strand = Plus / Minus
Query: 1 gatgaaacacacaggcggaaactgtctgcagctggcaaagccacgcccctgctagagcac 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gatgaaacacacaggccgaaactgtctgcagctggcaaagccacgcccctgctagagcac 598
Query: 61 taggctaatcacaggcagctgctgcagccaatccaaagcagccctgcctccccacacccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 taggctaatcacaggcagctgctgcagccaatccaaagcagccctgcctccccacacccg 538
Query: 121 ggaacaaaaacacaagcacgttcccatttctgtgttttttaaaagaaaccaccctgctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggaacaaaaacacaagcacgttcccatttctgtgttttttaaaagaaaccaccctgctgt 478
Query: 181 tatcatcagtgtaattagcactggagtggcaggctgcctgcctctccctaacttaagcca 240
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 477 tatcatcagtgtaattagcactggagtggcaggttgcctgcctctccccaacttaagcca 418
Query: 241 ccagcagtactagggctagccagtactagtcctcaagaatgaagaa 286
||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 417 ccagcagtactagggctaggcagtactagttctcaagaatgaagaa 372
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
