BAC Information

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BAC

Clone NameMSMg01-067P02
Chromosome1 (Build37)
Map Location 15,391,421 - 15,391,662
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067P02.T7 (MSMg01no067_p02.b1)MSMg01-067P02.TJ (MSMg01no067_p02.g1)
ACCAG292556AG292557
length712689
length of high quality
(start - end)
52 (37 - 88)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no067_p02.b1 PHD_FILE: MSMg01no067_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:12 2005CHROMAT_FILE: MSMg01no067_p02.g1 PHD_FILE: MSMg01no067_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTA
TTTAGCTCTGTACCCCATTTTTAAATAGGGTTATTTGGTTCTCTGTAGTT
TAACTTCTTGAGTTCTTTGTATATACAGAATATTATCCCTCTCAGATGTA
GTATTTGTAAAGATGTTTATAGTAGGATGTTGAAGTCTCCCACTATTATT
GTGTGGCGTGTGATGTGTGCTTTGAACTTTAGTAAAGTTTCTTCTATGAA
TGCGGCTGCACTTGCATCTGGTTCATATATGTTCAGAATCGACAGGTCCT
CTTGGTATATTTTTCCTTTTATGAGCAAGAAGGGTCCTTCCTTATCCCTT
TTTTTTTCTTTTGATCCCCCCCCCCCCCCTTTATCTGATATTATATTGGA
TACTCCTGTTTGTTTCTTGAAAAAAAATTGATAGTATAATTGTTTATCAG
CCTTCTCCCCTGATTTATTGTCTGTTTTTTGACTCTGTACAGTGCTCTCC
CGTCTTGTTGCCATATGTTTGTTTTCTTCCTCTCGTACCCCTTTGCCCCC
TCCTTTTTTCTCCTTTTTCTATAATGTAAAAATTCCTGCCCTTTACTCAT
CCCTTGTCCTTTTTCCTTTTCTCTTCTTTTTATTTTATTTATTTATTCTT
TTCTTATTTTTCTTTTTTTTTTCTATCTCCTATCTTACTTCTTCTCCTCT
TCTTTTTCTCTA
AGTCAATGCATTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGGGCTTTTTGTTATTTGTTTG
TTTCCTGCATGACATTTAACAACAGGCCCCAACTTCATAGGAATGTACTG
AAAAGGACATATAGGGGCCAAGGCTTTCTCAGTGGAACAGCATTTGGTTA
GCATGTATAATGGGTTTTAATCTTCAAAACTGTGGGGAGAAGTTTAAAAT
TGTCAGTTCTTTTCTGTCTCTTGGTGATGTATAAGTGTCTCCTGTGAGTC
CGGAATATTCTTCTCAGGGATTTGAGGGCCATCAGGAGGAACAGGGCTAG
GCCCCACTTTACCTAGATTCCCCCCCCCCCCCACAGTATCTGTTTATATA
GTATAGTTGGGCTAATCCCTTGCAAAAAGACAAAAAATTGGGGGGGGGGG
GCTGTTCCGATTGCTTCAGCCCCATTCACTCACTTTTCTGCTCTCTTCAG
TCTCACTTTAAGGTATTCATCATCCCTGTAAAAGGGAACCCTGCTCCTTG
TATTAATGTCCACTAGTTACTGGGCCCGATCCCATTTGTTCCCCTGTGCT
TATCTCTTGGTACTTCCGGACCTTGCCTTCGCCACACCCAACTATAGATT
GATATCATCTTCCTATGCCCCCCTCCCGTTCCCTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_p02.g1 MSMg01no067_p02.g1 CHROMAT_FILE:
MSMg01no067_p02.g1 PHD_FILE: MSMg01no067_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:12 2005
         (242 letters)



>mm_chr1_15391221_15391862
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgggctttttgttatttgtttgtttcctgcatgacatttaacaacaggccccaacttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actgggctttttgttatttgtttgtttcctgcatgacatttaacaacaggccccaacttc 383

                                                                       
Query: 61  ataggaatgtactgaaaaggacatataggggccaaggctttctcagtggaacagcatttg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctaggaatgtactgaaaaggacatataggggccaaggctttctcagtggaacagcatttg 323

                                                                       
Query: 121 gttagcatgtataatgggttttaatcttcaaaactgtggggagaagtttaaaattgtcag 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttagcatgtataatgtgttttaatcttcaaaactgtggggagaagtttaaaattgtcag 263

                                                                       
Query: 181 ttcttttctgtctcttggtgatgtataagtgtctcctgtgagtccggaatattcttctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttcttttctgtctcttggtgatgtataagtgtctcctgtgagtccggaatattcttctca 203

             
Query: 241 gg 242
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)