BAC Information

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BAC

Clone NameMSMg01-068D07
Chromosome1 (Build37)
Map Location 175,477,301 - 175,631,679
singlet/doubletdoublet
Overlap geneLOC623121, AI447904, E430029J22Rik
Upstream geneEG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916
Downstream geneLOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068D07.T7 (MSMg01no068_d07.b1)MSMg01-068D07.TJ (MSMg01no068_d07.g1)
ACCAG292754AG292755
length701713
length of high quality
(start - end)		486 (42 - 527)341 (76 - 416)
definitionCHROMAT_FILE: MSMg01no068_d07.b1 PHD_FILE: MSMg01no068_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:33 2005CHROMAT_FILE: MSMg01no068_d07.g1 PHD_FILE: MSMg01no068_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:33 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(175,631,194 - 175,631,679)(175,477,301 - 175,477,641)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAATACCGCGGAATTCAGT
TTCCGTATCCACGGTGGCATGGAACATTCTTTTGTCTTTTCTAATGTCAT
ATGTGAATGGCTCTGTGACTTTTAACACCATCACTTGTTTGAAACCTTGC
TGGTGACCATATTCTTCAGAAGGTTGTTTAGGTACTTTCTTCAGTCTTGG
TTTCTGCATAGAATTCACATAGGAAAGCCAGGCACAGTTAAAACAAACTA
AAGAATAGCACTATTAGGCAGAGTGGAGAAATCTAAGCAATGCTTAATAT
GCTGACATAAGTGATGTGAAATGACTGAAGTTCTGGGCAGTAATTCCAGC
ATGTTGTAATTACTCACAGTAGGTAAATAAGTTTCATTAATACTTTGGAG
GTATTTGCCCATACACTCGAGGCCTTGTGAATGCTAAACAAATTGTCTCC
CTGTAAGCTTCACCACAAGTCTAATGAGGACAACAGCACATTTTTTTAAA
CTTAGATTACAAATCATTTCATACAAACACACATAATCAGCACTGTCTTT
TAAATCACTTAGTCAGCCACTGGAAGCAACAGCCCATGGGCTCTGCTGAT
TTGATAATTCAAACGATAAGTTCTTCCCATTGTATATGACCTTCCCTGCT
GATAAATCCTGTATTTGGAATATATAGGTAATTTTGATCACTTGTCTGCT
G

NCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCCCAATTCAGTAATCACTGTATTGTTCGGAGTTG
TGACTGTTGAAATTCTGGGTCCTTCTTTTATCTCTTATTGGTGCTAGAAC
CTGTTCTTGGATGTATACTTGACTCTTCCTGTGCTCTTGGCCAAAGTGCA
AAGGGTCTGCATCATCTTGTCATATATGGGAATCATGGTTGAGAGCTTCA
CTATGGCCCTTGCTCACTTCCTGTTTCTTAAACAGTTCTCATTATAGTCT
CGTATTCCTTGGTATTTGTGCCCTTGTTTGTGCATTCTGTGCCCCAATGA
CTGCCATGCTAAACATCTGTGTACTTTTTAGCGTCAGATCACATTTCCTA
AGGGACACTATATCAATAGTTTTGTTATTCCTCTTTTTAGGCTTGATTTC
CTTTGATGATCTAATTGGCTAATAGAGACTTTCTATCTACAAGCCATTCT
TAATTCTTGCTAGAGTCCTTGCATCTATTGTAAAATTCTAAAGGTTTAAA
ATTGAACAGGTTTGAACTATTTTGTGATTTGTGACAATTCTAGTATATCT
TAAAATATACTGGTTGTTTAGATGACTCTTTACTACGCATATCTTTTTAT
GAATCCTAAATTACCTGTTATTCCTTTATGCTTTTGTTGTAGAACTATTA
CTATTGCTTTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_d07.b1 MSMg01no068_d07.b1 CHROMAT_FILE:
MSMg01no068_d07.b1 PHD_FILE: MSMg01no068_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:33 2005
         (486 letters)



>mm_chr1_175630994_175631879
          Length = 886

 Score =  932 bits (482), Expect = 0.0
 Identities = 485/486 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattcagtttccgtatccacggtggcatggaacattcttttgtcttttctaatgtcata 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaattcagtttccgtagccacggtggcatggaacattcttttgtcttttctaatgtcata 627

                                                                       
Query: 61  tgtgaatggctctgtgacttttaacaccatcacttgtttgaaaccttgctggtgaccata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgtgaatggctctgtgacttttaacaccatcacttgtttgaaaccttgctggtgaccata 567

                                                                       
Query: 121 ttcttcagaaggttgtttaggtactttcttcagtcttggtttctgcatagaattcacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttcttcagaaggttgtttaggtactttcttcagtcttggtttctgcatagaattcacata 507

                                                                       
Query: 181 ggaaagccaggcacagttaaaacaaactaaagaatagcactattaggcagagtggagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggaaagccaggcacagttaaaacaaactaaagaatagcactattaggcagagtggagaaa 447

                                                                       
Query: 241 tctaagcaatgcttaatatgctgacataagtgatgtgaaatgactgaagttctgggcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tctaagcaatgcttaatatgctgacataagtgatgtgaaatgactgaagttctgggcagt 387

                                                                       
Query: 301 aattccagcatgttgtaattactcacagtaggtaaataagtttcattaatactttggagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aattccagcatgttgtaattactcacagtaggtaaataagtttcattaatactttggagg 327

                                                                       
Query: 361 tatttgcccatacactcgaggccttgtgaatgctaaacaaattgtctccctgtaagcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tatttgcccatacactcgaggccttgtgaatgctaaacaaattgtctccctgtaagcttc 267

                                                                       
Query: 421 accacaagtctaatgaggacaacagcacatttttttaaacttagattacaaatcatttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 accacaagtctaatgaggacaacagcacatttttttaaacttagattacaaatcatttca 207

                 
Query: 481 tacaaa 486
           ||||||
Sbjct: 206 tacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no068_d07.g1 MSMg01no068_d07.g1 CHROMAT_FILE:
MSMg01no068_d07.g1 PHD_FILE: MSMg01no068_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:33 2005
         (341 letters)



>mm_chr1_175477101_175477841
          Length = 741

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaatcactgtattgttcggagttgtgactgttgaaattctgggtccttcttttatctct 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaatcactgtattgtttggagttgtgactgttgaaattctgggtccttcttttatctct 260

                                                                       
Query: 61  tattggtgctagaacctgttcttggatgtatacttgactcttcctgtgctcttggccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattggtgctagaacctgttcttggatgtatacttgactcttcctgtgctcttggccaaa 320

                                                                       
Query: 121 gtgcaaagggtctgcatcatcttgtcatatatgggaatcatggttgagagcttcactatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcaaagggtctgcatcatcttgtcatatatgggaatcatggttgagagcttcactatg 380

                                                                       
Query: 181 gcccttgctcacttcctgtttcttaaacagttctcattatagtctcgtattccttggtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcccttgctcacttcctgtttcttaaacagttctcattatagtctcgtattccttggtat 440

                                                                       
Query: 241 ttgtgcccttgtttgtgcattctgtgccccaatgactgccatgctaaacatctgtgtact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtgcccttgtttgtgcattctgtgccccaatgactgccatgctaaacatctgtgtact 500

                                                    
Query: 301 ttttagcgtcagatcacatttcctaagggacactatatcaa 341
           |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttagtgtcagatcacatttcctaagggacactatatcaa 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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