AATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAA
TTCACTAAGACAATACCTCAGTGAGCGGGCGCCAGAGCCTGAGTCATTTC
AACTCACTGTGAGCAGAGCATGACCCAAGACCCAGTAGTAATCAATCCGG
GATGAAGTGCGAAGGGCAAAGCAAGACAAAGGACATTTTCAGTGCCACAG
TGCTGTAGCTCTCTAACTCCTTGATACCTGAGAGCAGTGTTTAGGTAAGT
CCTGATGGATTACTCTTTAGGGACATATAGATACAATTATAGTGAGTCTT
ATTTTGGAAACAAGAAATTTCAAGGAATCTTTGTTGACAAATCAAGAGGA
ATTTTGAAGTTATTGNGTCATATACCCACCCCCCCATATAAAATGTCATG
CACACATACATAGTGGATCGTTTATGTGAAAAAAAAAATACTCTTAGAGC
GGAGCATAGAGACAGGCACAATTTTCAAGGAAAATAGCAAGCTCACATAT
GTTTATGAAAATAATAGTCTTATGGCAGAATGGAGTAACTGTTTCATAAT
ATAGAATATGTATGATAGGCTGGGACTAAAGCACTAACACACATATGAGG
CTCTAGATTCAACCCCTAGTCCTGAAAACTTAACTTGGATGTTTGTGCAT
AGGAATACAAAACGTTTTCCATTATAAGTTTTTGATTATGGGATGTCTAT
TCTTCCGCTAAGGAG

AACGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAGTTCGAGGCCAGCCTGGTCTCC
AAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGGAACTTTGTCTCAAA
AACAAAACAAAACAAAAACAAAACAAACAAACAAACAAAAACAACAACAC
CAAAAAAGAGAGCGAGAGAAACTAGAAAGATCTGATGGCTGCTGTCCCTT
GAAATGGATGGTAGACACAGCATCTAGCACAAAGAGAATCAGCATTAAAT
AAAGTCTTCCAGATGTATCTTCAGAAATACAACGAGCCAAACCTGGGTTG
ACCCAGTTTTAATGATGTCTTATTTCCAACTACCATCCTTTTCCATATTT
CTTATACATAATCTGAACATGAACAAAATCCTAGAGGGAGCCACAATAAT
GGCCCACAACTGCAGTCATCCCTAGCAGGCTAAGAAGTAAAGGCAAGAAA
ATGAGAATTTCAAGGTCATGCATGGTTACCTAGGCAATCAAAGCCAGTTT
CATTTACTTACATCATGAGTCTCAAAACGCCCAAATTATAACACTAGTAG
GAATGAGGAAAGTGAAGAGGATGAGGTGTGAGGCTATATCCTTTCATTCT
TTCTCTCTTTTTACTTCCTTTTTTCTCCCTCTTTCTTACTTCCTTTTCAC
CTCGATTTTTTTTCTCTCTTTCT

Query= MSMg01no068_d16.b1 MSMg01no068_d16.b1 CHROMAT_FILE:
MSMg01no068_d16.b1 PHD_FILE: MSMg01no068_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:35 2005
         (296 letters)



>mm_chr1_66416066_66416761
          Length = 696

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgagcgggcgccagagcctgagtcatttcaactcactgtgagcagagcatgacccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 201 agtgagcgggcgccagagcctgagtcatttcaactcactgtgagcagagcatgaggcaag 260

                                                                       
Query: 61  acccagtagtaatcaatccgggatgaagtgcgaagggcaaagcaagacaaaggacatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acccagtagtaatcaatccgggatgaagtgcgaagggcaaagcaagacaaaggacatttt 320

                                                                       
Query: 121 cagtgccacagtgctgtagctctctaactccttgatacctgagagcagtgtttaggtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtgccacagtgctgtagctctctaactccttgatacctgagagcagtgtttaggtaag 380

                                                                       
Query: 181 tcctgatggattactctttagggacatatagatacaattatagtgagtcttattttggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgatggattactctttagggacatatagatacaattatagtgagtcttattttggaa 440

                                                                
Query: 241 acaagaaatttcaaggaatctttgttgacaaatcaagaggaattttgaagtta 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagaaatttcaaggaatctttgttgacaaatcaagaggaattttgaagtta 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no068_d16.g1 MSMg01no068_d16.g1 CHROMAT_FILE:
MSMg01no068_d16.g1 PHD_FILE: MSMg01no068_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:35 2005
         (519 letters)



>mm_chr1_66524824_66525742
          Length = 919

 Score =  988 bits (511), Expect = 0.0
 Identities = 517/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgagttcgaggccagcctggtctccaaagtgagttccaggacagccagggctacacagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 tgagttcgaggccagcctggtctccaaagtgagttccaggacagccagggctacacagag 599

                                                                       
Query: 61  gaactttgtctcaaaaacaaaacaaaacaaaaacaaaacaaacaaacaaacaaaaacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaactttgtctcaaaaacaaaacaaaacaaaaacaaaacaaacaaacaaacaaaaacaac 539

                                                                       
Query: 121 aacaccaaaaaagagagcgagagaaactagaaagatctgatggctgctgtcccttgaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aacaccaaaaaagagagcgagagaaactagaaagatctgatggctgctgtcccttgaaat 479

                                                                       
Query: 181 ggatggtagacacagcatctagcacaaagagaatcagcattaaataaagtcttccagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggatggtagacacagcatctagcacaaagagaatcagcattaaataaagtcttccagatg 419

                                                                       
Query: 241 tatcttcagaaatacaacgagccaaacctgggttgacccagttttaatgatgtcttattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 418 tatcttcagaaatacaacgagccaaacctgggttgacccagttttaatgatgtcttagtt 359

                                                                       
Query: 301 ccaactaccatccttttccatatttcttatacataatctgaacatgaacaaaatcctaga 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ccaactagcatccttttccatatttcttatacataatctgaacatgaacaaaatcctaga 299

                                                                       
Query: 361 gggagccacaataatggcccacaactgcagtcatccctagcaggctaagaagtaaaggca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gggagccacaataatggcccacaactgcagtcatccctagcaggctaagaagtaaaggca 239

                                                                       
Query: 421 agaaaatgagaatttcaaggtcatgcatggttacctaggcaatcaaagccagtttcattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 agaaaatgagaatttcaaggtcatgcatggttacctaggcaatcaaagccagtttcattt 179

                                                  
Query: 481 acttacatcatgagtctcaaaacgcccaaattataacac 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 178 acttacatcatgagtctcaaaacgcccaaattataacac 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)