BAC Information

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BAC

Clone NameMSMg01-068H05
Chromosome1 (Build37)
Map Location 80,490,518 - 80,490,839
singlet/doubletsinglet
Overlap genenone
Upstream geneAp1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneDock10, LOC665092, 9430031J16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068H05.T7 (MSMg01no068_h05.b1)MSMg01-068H05.TJ (MSMg01no068_h05.g1)
ACCAG292942AG292943
length703714
length of high quality
(start - end)
338 (63 - 400)251 (75 - 325)
definitionCHROMAT_FILE: MSMg01no068_h05.b1 PHD_FILE: MSMg01no068_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:53 2005CHROMAT_FILE: MSMg01no068_h05.g1 PHD_FILE: MSMg01no068_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCAC
AATGAGTCTCCAAGAAACCAAGGTTAGACTTCTTTAGGCAACTTCATGCT
GACTGATGTCTCTGGTGTCCCCAGTAGAAGTGTTCAGTCAAAGGAGACTG
AGAGAACATACATCACTCAGGCTCTGAAGGAGAGTGCCCAGACACAGATG
CTCAGCCCTGTTGCTGATACCCTTGTGACCCTGAGCAAGGATCCACACTG
AGCCTCACTTATTTCTTCTGGAAAATGGTACAAACAATGAGTAAGGGGAT
CAAAACAGAACACAATGTTCATAATTCAGAAACTGGCAGCAGTAAATGCC
CTGTATGTGTGAGATGTAATTAATAGCATGGTAACAAATACAGCTCAAAT
GAGAAATTAGGCATTGTGACATCAAGTTGTTTTTAGCAATATTGATTCAT
ATAATTGCAAAATATGCATTTAGTGAATGCATAAATTTATAAACATGGCA
TTTCTCGCTGTTTCCCCTTAAATACACTGATGAGCACCTCATAGCTATTG
TATGTTCCTGTTTATTAAATCTCCACAGGCTTCAATTCTTTCTCGCATGT
CATCTTGCTGCTGCATAGAGTTTTATAAGTCTCCTACAGTATTACTAATT
GTTTTTAAATATTTGCTCCTCTTCCATTGCATCCCCTTTGACTGATGCTA
CCT
TCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCCCAATTCCAATTTCTAGAGAAGGATCTGATTGGT
CAGCCACACAACCCAAATGACTCATCCCACAAGAATAGGAGTAACAATAT
GTGATAAAAATGCTGTCTTTTATTTACACAATGGAGTACTACTCAGCTAT
TAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGG
GCATCATCCTGAGCTAGGTAACCCAATCACAAAGGAACTCACACTATATG
TACTCACTGATAAGCGGATATTATTCCAAAACTTATTATACCCAAGATAT
AAGATACAATTTGCCAAATGCATGAAACTCTAGAAGAATGAAGACCAAAG
TGTGGACACTTTGCACCTTCTTATAATTGGGAACAAAATACCCATGGATG
GAGTTTACAGAGACTAAGTTTTGGAGCTTGTTCTATAGGATGGATCCATC
CAGAGACTGCCTTATCTAGTGATTCACCCTAATATCAGCTTCCAAACGTT
GACACCTCTGTATACTCTACCAATGATTTTGCTTGAAAGGACTCATATAT
AGTTGTCTCTTGCGAAACTACGTCGTGCCTCATTTTACCCTCTATCGCAT
GTTCTCTGTCATCTATTGGATGGTTCTTCGCCTTCTTCATGTTTTGAACT
ACTTTTCTTTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_h05.b1 MSMg01no068_h05.b1 CHROMAT_FILE:
MSMg01no068_h05.b1 PHD_FILE: MSMg01no068_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:53 2005
         (338 letters)



>mm_chr1_80490102_80490839
          Length = 738

 Score =  576 bits (298), Expect = e-169
 Identities = 316/322 (98%)
 Strand = Plus / Minus

                                                                       
Query: 15  gacttctttaggcaacttcatgctgactgatgtctctggtgtccccagtagaagtgttca 74
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gacttcttaaggcaacttcatgctgactgatgtctctggtgtccccagtagaagtgttca 679

                                                                       
Query: 75  gtcaaaggagactgagagaacatacatcactcaggctctgaaggagagtgcccagacaca 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtcaaaggagactgagagaacatacatcactcaggctctgaaggagagtgcccagacaca 619

                                                                       
Query: 135 gatgctcagccctgttgctgatacccttgtgaccctgagcaaggatccacactgagcctc 194
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 618 gatgctcagccctattgctgatacacttgtgaccctgagcaaggatccacactgagcctc 559

                                                                       
Query: 195 acttatttcttctggaaaatggtacaaacaatgagtaaggggatcaaaacagaacacaat 254
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 558 acttatttcttctggaaaatggtacaaacaatgagtaagaggatcaaaacagaacacaat 499

                                                                       
Query: 255 gttcataattcagaaactggcagcagtaaatgccctgtatgtgtgagatgtaattaatag 314
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 498 gttcataattcaggaactggcagcagtaaatgccctgtatgtgtgagctgtaattaatag 439

                                 
Query: 315 catggtaacaaatacagctcaa 336
           ||||||||||||||||||||||
Sbjct: 438 catggtaacaaatacagctcaa 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)