Query= MSMg01no068_h13.b1 MSMg01no068_h13.b1 CHROMAT_FILE:
MSMg01no068_h13.b1 PHD_FILE: MSMg01no068_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:55 2005
(263 letters)
>mm_chr1_116435154_116435816
Length = 663
Score = 456 bits (236), Expect = e-133
Identities = 254/260 (97%)
Strand = Plus / Minus
Query: 1 tgcaatttattgagtatgctggaatagggcaaagggatgggtagtacttgcatacccgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgcaatttattgagtatgctggaatagggcaaagggatgggtagtacttgcatacccgtg 401
Query: 61 aaggaaagggaaatgagctgggacacttagagtaagcttgtctgtagagtttcttgtatg 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 400 aaggaaagggaaatgagctgggacagttagagtaagcttgtctgtagagtttcttgtatg 341
Query: 121 taattcaaagcccaatggtcattttataggtctggtggttacactgaccttctgcgtaca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 340 taattcaaagcccaatggtcattttataggtctggtggttacactgaccttctgtgtaca 281
Query: 181 tcatttccaattgggtaactctgccattcatataaggacaaaataatctgggaatatgga 240
||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 280 tcatttccaattgtgtaactctgccattcagataaggaaaaaataatctgggaatatgga 221
Query: 241 aataaattcttttatctcag 260
||||||||| ||||||||||
Sbjct: 220 aataaattcatttatctcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space: 166116
Effective search space used: 166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no068_h13.g1 MSMg01no068_h13.g1 CHROMAT_FILE:
MSMg01no068_h13.g1 PHD_FILE: MSMg01no068_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:55 2005
(289 letters)
>mm_chr1_116284636_116285318
Length = 683
Score = 503 bits (260), Expect = e-147
Identities = 280/290 (96%), Gaps = 8/290 (2%)
Strand = Plus / Plus
Query: 1 cacttctctatctttgtatagcaataattttaatg-actgagccatctgatacccacaaa 59
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 201 cacttctctatctttgtatagcaataatttt-atgtactgagccatctgatacccacaaa 259
Query: 60 cataatctgaaattaatgtcttgcaataatactaataataatggctatattcaggtgaac 119
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 260 cataatctgaaattaatgtcttgcaataatac------taatggctatattcaggtgaac 313
Query: 120 cctttgaggtgtttgtgactctaggagttcatttgtaaacaggataatactgaggtcaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cctttgaggtgtttgtgactctaggagttcatttgtaaacaggataatactgaggtcaag 373
Query: 180 tgggacaaagtcaatgtttatgtaaactgctagtgcttttcctggtacatataaaattct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 374 tgggacaaagtcaatgtttatgtaaactgctagtgcttttcctggtacatataaaatcct 433
Query: 240 attcttactctatctcacaccatttactgcagtggtcttatcgattatgc 289
|||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 434 attcttactctatctcacaccatttactgcagtggtcttagcgattatgc 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 683
Length adjustment: 9
Effective length of query: 280
Effective length of database: 674
Effective search space: 188720
Effective search space used: 188720
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
