ATTTGCGGCGCTAAACGACTCCTATAGTTTCAGGATCCGCGGAATTCCAT
AATGAGATTACCGAAAAAGTGCTCAAAATCCTGGGAATAATCATACTAGG
TGAATATGGATATCAATAGCTTGTGTGTCACCAAAATAAATAAGTATAGA
ATATTACATCAATCAAATGAGTAACTATATGTATGTTTATCATAATAGAT
ACATGGAATTATTTATTAAGGTTTAATACACATTCATGACGCAATAACCT
GAGAAACCAGGAACTTGTCAGAGGTTGAGAATAATATGCTCATAGTCGAC
CTCATAGGAAAAGATGGAAAGATGAAATACAAAAGAAAACACTTAAACCT
GAATTCCATGTTTTCTATTAATATTCAGTACAGTGGTCCAAGTCATAGCC
AGAGGAATAAAGGCAGGAAAAAAAAGACAAAATTTAAAAGAGGTTATCCA
AACAGGAAAAGAAGGTTTATATTATCTCTCATTGAAAATAACATGTTCTA
TCGTGAGCAAAAATCAAAATCCTCAATGAGCTTGTAAGTTCAGTAAGCTT
TCAGTTCAAAAACTTATATATAATAAGGTCATAGAAATACAACGAGCTTT
CCAGAGCAATCTGCACATACATTTCTTTCGAGAACCAGTGAAAGCCTTCT
CAGAAAGAGAAGAAGCAGGAACAAAACCCCATAACAACTACAAAACTTA

NCTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTAGTTAAGAACTTAAAG
AGGGTCAGGAAGTTGAACAGAGGTGTATAGCAGTGGAGGATGGGAAACTG
GGGGTAGTCACTAGAAAGTCCCAGATGCCAGGAAAGCAAGAGACCCCCAG
AACCCAACAGGGATGACATTAGCTGAAATACCCAACAAAGGGGAAATAGA
ACCTGTATAGACCATATCCAGTGGATAGGCATAGCCTCCAGTTGAGGGTT
GGAGCCACCCACCCACATCAAAATTACTACACAAGAATTGCTCCTGTCTA
AAGGAAATACAGGGACAAAAAATGGAACAGAGTCTGAAGGAAAGGCCATC
TAGAGACTGCCCCATCTAGGGATCCATCTCATGTGCAGACACCAAACCGA
GACACTATTGCTGATGCCAAGAAGTGGTTTTTGACAGCAGCCTGGTATAG
CTGTCCCCTGAGAGGCTGTGCCAGAGCCTGACCAATACAGATGCGGATGC
TTAAGGCCAACCATCAGATTGAACATGGGTGACCCCAATGGAGGAATCAG
GGGATAGGACTGAAGGATCCGATAGGGTTTGCAACCTCCTAGGATGAACA
ACCATGTCAACCGAGTAGACAGATGCCCCCCCTAGAGCTTAACCATCACC
CAAAA

Query= MSMg01no068_j07.b1 MSMg01no068_j07.b1 CHROMAT_FILE:
MSMg01no068_j07.b1 PHD_FILE: MSMg01no068_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:03 2005
         (573 letters)



>mm_chr1_30211406_30212378
          Length = 973

 Score =  926 bits (479), Expect = 0.0
 Identities = 552/585 (94%), Gaps = 17/585 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccataatgagattaccgaaaaagtgctcaaaatcctgggaataatcatactaggt 65
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccataatgagattagggaaaaagtgctcaaaatcctgggaataatcatactaggt 265

                                                                       
Query: 66  gaatatggatatcaatagcttgtgtgtcaccaaaataaataagtatagaatattacatca 125
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 266 gaatatggatatcaatagcttgggtgtcaccaaaataaataagtataggatattacatca 325

                                                                       
Query: 126 atcaaatgagtaactatatgtatgtttatcataatagatacatggaattatttattaagg 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 326 atcaaatgagtaactatatgtatgtttatcataatagatacatggaattatttaataagg 385

                                                                       
Query: 186 tttaatacacattcatgacgcaataacctgagaaaccaggaacttgtcagaggttgagaa 245
           ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct: 386 tttaatatacattcatgacacaataacctgagaaaccaggaacttgacagaggttgcgaa 445

                                                                       
Query: 246 taatatgctcatagtcgacctcataggaaaagatggaaagatgaaatacaaaagaaaaca 305
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 446 taatatgctcatagtcgacctcataggaaaagatggaaatatgaaatacaaaagaaaaca 505

                                                                       
Query: 306 cttaaacctgaattccatgttttctattaatattcagtacagtggtccaagtcatagcca 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cttaaacctgaattccatgttttctattaatattcagtacagtggtccaagtcatagcca 565

                                                                       
Query: 366 gaggaataaaggcaggaaaaaaaa--gacaaaatttaaaagaggttatccaaacaggaaa 423
           ||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||
Sbjct: 566 gaggaataaaggcaggaaaaaaaaaagacaaaatttaaaataggttatccaaacaggaaa 625

                                                                       
Query: 424 agaaggtttatattatctctcattgaaaataacatgttctatcgtgagcaaaaatcaaaa 483
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 626 agaaggtttatagtatctctcattgaaaataacatgttctatcatgagcaaaaatcaaaa 685

                                                                       
Query: 484 tcctcaatgagcttgtaagttcagtaagctttcagttcaaaaac-t---tatatataata 539
           |||||||||||||||||||||||||||||||||| || |||| | |   |||||||||||
Sbjct: 686 tcctcaatgagcttgtaagttcagtaagctttcaatttaaaatcgtatatatatataata 745

                                                        
Query: 540 a-----------ggtcatagaaatacaacgagctttccagagcaa 573
           |           |||||||||||||||||||||||||||||||||
Sbjct: 746 aatatataataaggtcatagaaatacaacgagctttccagagcaa 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)