XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCCT
TTACCTATTTTTTTTGTTGTCTCATTTTGTTTTTCTTTTTTACAGACTGG
GGATCTATTCTGGGGATTCTCTTGAGAATGATTTTTGGAGAAACTTTCAT
TTCTTGTCTCTGTTTTTTTCTAAACAGTGTGTGAGCATGTTTGCTGCTTA
TTACTTGGTGGCATTTGTAGTTTAGTTTTGACACCTTGGCACTTTTGTAT
TTCTGACTAATTTGCTGCATTTTCTAGTTGGATCAGTGCATCACATGTGA
AACTGCAGTATTTGAATTTACCGTCTGTGAAATAATTTAGTTCCAACTCA
GATTTTATGGGGAGTTCATTTCAGATTCCACATGAAACCAGGGTGTAGTG
GTGTGTGTTTTTAACTCCAGAATTAGGGAAATATAGACAGTTGGATCCCC
GGAGATGACTGGCCAGCTAATCTGGCTGAACTAATGATATCCGGGTTCAG
TGAGAGACCCCATCTCAAAACATAAGGTGGAGAGCAACTGGACTCCTTAC
CCAGGCATATGCCAGGCACATACACACGAGCAAGCACATATACATAGCCA
GCCTCCTTAAGTTTAAAATAAAAATTATTGTATATTTTTATATGTTACTA
CATATAAATTTTAGGTTCTTTAAAAAAAAGACCCTCTCAAGATTTTTTTG
NTA

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGCCATTTAGAAGTTTCAGAAATTCA
AACCACAGTTAGAAACCTGAATTATTCTTTTCCTCTGAGAAGGTCAAAGA
TTATGGCTGGGAATGTCTGCTGGGTATCTAAGTAATGACATGTACTTACA
CTGGTGGAGAGAAATTATTTAAAAAATTATTTTTATTATTTAGTGTGTGA
TTTTGCTGCATGCATATATGCATCATGTGTGTGCAGTAACCCAGGAGACC
AGGAGAGGACATTGGATCCCATAGGACTGCAGTTATATATGGTTGTACTG
TAGATGCTGGGAATTGAACCTGGGTTCTCTGTAAGAATAGCCAGTGCTCT
TAATCACTGAGGTATCTCTCCTGTACCACCAGCGTATTTCTAAGGGATAA
GAGGACCATGTGATGACGGGTCTGGCCTTGAGGACATTGGAAAAGACTGA
GCCATAAGGCTTCCTGCCTCCAAGTGAGGAGCTCTCTGATAAAAGGTTGG
AGGATACTATAGAGGGCGCTGCTGAAGGAGAGGGTGGAGGTGGAGTAAGA
ACCATCTACCAGAGGCAAGCATCCAGAGAGGTGAACTCTGATTGAGTTCT
GTAAGAAAGAATGAGTAAGCACCAATTTTCCTACCCAACACACAAACGTG
TAGCTCAGACTTTA

Query= MSMg01no068_l19.b1 MSMg01no068_l19.b1 CHROMAT_FILE:
MSMg01no068_l19.b1 PHD_FILE: MSMg01no068_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:16 2005
         (637 letters)



>mm_chr1_87502442_87503477
          Length = 1036

 Score = 1108 bits (573), Expect = 0.0
 Identities = 618/635 (97%), Gaps = 7/635 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   aattcctttacctattttttttgttgtctcattttgtttttcttttttacag-actgggg 66
           ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct: 208 aattcctttacctattttttt-gttgtctcattttgtttttcttttttgcagtactgggg 266

                                                                       
Query: 67  atctattctggggattctcttgagaatgatttttggagaaactttcatttcttgtctctg 126
           ||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 267 atcaattctggggattctcttgagaatgacttttggagaaactttcatatcttgtctctg 326

                                                                       
Query: 127 tttttttctaaacagtgtgtgagcatgtttgctgcttattacttggtggcatttgtagtt 186
           |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 327 tttttt-ctaaacagtgtgtgagcatgtttgctgcttattacttcgtggcgtttgtagtt 385

                                                                       
Query: 187 tagttttgacaccttggcacttttgtatttctgactaatttgctgcattttctagttgga 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tagttttgacaccttggcacttttgtatttctgactaatttgctgcattttctagttgga 445

                                                                       
Query: 247 tcagtgcatcacatgtgaaactgcagtatttgaatttaccgtctgtgaaataatttagtt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcagtgcatcacatgtgaaactgcagtatttgaatttaccgtctgtgaaataatttagtt 505

                                                                       
Query: 307 ccaactcagattttatggggagttcatttcagattccacatgaaaccagggtgtagtggt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ccaactcagattttatggggagttcatttcagattccacatgaaaccagggtgtagtggt 565

                                                                       
Query: 367 gtgtgtttttaactccagaattagggaaatatagacagttggatccccggagatgactgg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtgtgtttttaactccagaattagggaaatatagacagttggatccccggagatgactgg 625

                                                                       
Query: 427 ccagctaatctggctgaactaatgatatccgggttcagtgagagaccccatctcaaaaca 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccagctaatctggctgaactaatgatatccgggttcagtgagagaccccatctcaaaaca 685

                                                                       
Query: 487 taaggtggagagcaactggactccttacccaggcatatgccaggcacatacacacgagca 546
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 686 taaggtggagagcaactggactccttgcccaggcatatgccaggcacatacacacgagca 745

                                                                       
Query: 547 agcac----atatacatagccagcctccttaagtttaaaataaaaattattgtatatttt 602
           ||||     |||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 746 agcatgtgtatatacatagacaggctccttaagtttaaaataaaaattattgtatatttt 805

                                              
Query: 603 tatatgttactacatataaattttaggttctttaa 637
           |||||||||||||||||||||||||||||||||||
Sbjct: 806 tatatgttactacatataaattttaggttctttaa 840


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space:   643302
Effective search space used:   643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)