BAC Information

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BAC

Clone NameMSMg01-068M08
Chromosome1 (Build37)
Map Location 90,153,968 - 90,154,218
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068M08.T7 (MSMg01no068_m08.b1)MSMg01-068M08.TJ (MSMg01no068_m08.g1)
ACCAG293187AG293188
length792811
length of high quality
(start - end)
251 (135 - 385)286 (140 - 425)
definitionCHROMAT_FILE: MSMg01no068_m08.b1 PHD_FILE: MSMg01no068_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:19 2005CHROMAT_FILE: MSMg01no068_m08.g1 PHD_FILE: MSMg01no068_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCTCTTTTTTTTTCCTCCTTTTTTTTTTCTTTCTTTTACTATT
TTTTTCCTCCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCC
AGAGAACCGCGGAATTCCATCCTGTTACCCGAGAGGCGTTCCAGTGATTC
ATTGGGGCTCACCTCATTCTTTTGGCAGCACCTCTGGAGACTAGTGCTGG
GCAGGCAATGGAGTGTGTTCAAATTCCACATAAACCCTTATGCATGCCTT
TGGGGTAAACCCCCTCCCCCCTGAGCTAGAGTCATTATGCCCAGTCTCTT
GAGTGTTACAAGTCTCGAGGAAGGAGGGACTGCCCTGATGGAAGGATCCA
GACAGCTCGGTGAAAACCTAGGAATTGGGATTGACCTTGGGTAATGGCTG
GGGTTTTGCTGGGCTTCCTGATGGCAGCCCACTTGTCGCCTCTTGATGTC
AGGAAAGCGAGTTTGCTACGCGCTGAAGGCCTTTGCCCTCTTTGGTAAGC
TTACAACAGTGGTTGGGATTTCCAAGAAGCATTTCTTCCAAGGGTAGGTT
AAGATAGGCTGGGTCTCCCTCCTGTTGTTCTGTCCGGACCCCTGTCCCAG
TGTGTTCCAGTTTATTCGCCCCTTCCCTTCTCATATCTTATGATTTTGGT
ACCATATTTGCCCCTAACGTTAAAGGTGTATCCTTTGCATCCTGGTTGAC
TCCTAACGAGCTTTCTTTATCTTCTTTGTTCCTCTTCTTTTTCGCTCCCA
TTCCCTTTTCTTGTTTTACCCGTTTTACATTCTTATTTATCN
TTTTTTTTTTTTTTTNCTNTTTTTTTNTTTCTTTTCTTTTTTTTTCCTCT
TATTCTATTTTNCTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGCGTCTCG
ACCTTTCGCTGACGAAGGGCTTCTCCACATGGATTAACTTTGCATTTTCC
TACTTTAAGGAGTTGGTAGGGGTAGGCTTGTTTGCCATGATCCTATTGCT
TTTGCTCTGGATGGTCTGTAAACTTAAAGCCCAAACAAAAAGGGACAAGA
TGGTGATAGTCCAAGCACTTGCTGCGTTAGAACACGGTGCCTCCCCTGAT
ATATGGTTATCTATACATAAGCAATAGGTTGCTGGTCGCTCAGCTCTTGT
ACCCCACGAGGCTAGTCTCATTGTATGGTATAGAGTGAGTGCGCTTCAGC
AGCCCGAGAGAGTTTCACGGCTAAGCACTGCAGTACAACGGCTCTGCGGC
ATAAATTGAGCCTATTCTAGGGAGACATGTCATCTTGTATGAAGGTTGAG
TGTCTAAGTGTCCTTCCCCCAGTACAAAACAACACGGGTAGTAGATCTAG
ACCCCTTCCTGGTGATACGCCCTGGAAAAAAGATTTTTGTGCTAAAGCTT
TCTATCATCTTCCACCACTGGGGGAATTTTGTACCCCCAATCCTCACATT
CTTCACTACTTGGGTTGGCTCTTGTTTGCCCTCTTTTAAATCAACCCCAA
CACCGGTCGTGAACCCCGTCNCACGCCCTGTAAACATAACGAATGTTCTC
TTTTACATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_m08.b1 MSMg01no068_m08.b1 CHROMAT_FILE:
MSMg01no068_m08.b1 PHD_FILE: MSMg01no068_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:19 2005
         (251 letters)



>mm_chr1_90153768_90154418
          Length = 651

 Score =  478 bits (247), Expect = e-139
 Identities = 250/251 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcgttccagtgattcattggggctcacctcattcttttggcagcacctctggagactag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggcgttccagtgattcattggggctcacctcattcttttggcagcacctctggagactag 260

                                                                       
Query: 61  tgctgggcaggcaatggagtgtgttcaaattccacataaacccttatgcatgcctttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgggcaggcaatggagtgtgttcaaattccacataaacccttatgcatgcctttggg 320

                                                                       
Query: 121 gtaaaccccctcccccctgagctagagtcattatgcccagtctcttgagtgttacaagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaaccccctcccccctgagctagagtcattatgcccagtctcttgagtgttacaagtc 380

                                                                       
Query: 181 tcgaggaaggagggactgccctgatggaaggatccagacagctcggtgaaaacctaggaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tcgaggaaggagggactgccctgatggaaggatccagacagctcggtggaaacctaggaa 440

                      
Query: 241 ttgggattgac 251
           |||||||||||
Sbjct: 441 ttgggattgac 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)