BAC Information

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BAC

Clone NameMSMg01-068O14
Chromosome1 (Build37)
Map Location 45,948,193 - 45,948,539
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644
Downstream geneSlc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068O14.T7 (MSMg01no068_o14.b1)MSMg01-068O14.TJ (MSMg01no068_o14.g1)
ACCAG293295AG293296
length682681
length of high quality
(start - end)
477 (73 - 549)560 (76 - 635)
definitionCHROMAT_FILE: MSMg01no068_o14.b1 PHD_FILE: MSMg01no068_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:30 2005CHROMAT_FILE: MSMg01no068_o14.g1 PHD_FILE: MSMg01no068_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGA
ATTCCAACCCCTTTCAGATGAGACCAAATTTAGAAATGGTGTTGTTGCTG
ATGTCTGCAGTTAATATGAGGCCATCCTGGACCACAGTGGGCTTCTAATG
CAATGCTACTGGCAATTTCATACTTGAAAAAACTGGACAGTTTGACAAAG
ATATAGAAGGCTGATAAATGAAGATGAAGGCGGAGAATGGGATGATACAG
CCCCTGCCAAAGCACACTCCCAGAAAAACCTGACCATCTAAAAGAAAGTC
TAGAGGTGTATTTGCTTATGTGCTGATGCATCAGTCTTGGGTTTCCACCC
ACCAGAACTGAGAGACAATACATTTCTGTTCTGAAAGGTAACACAGGCTA
TGCACAGCAACGTTTGGAAACAGCAGGTTGCCTGTGCCAGTCCCAGGTGG
TGCACATAAAAATCTTCCACCCACACTAAGGACAGAGTGGCATAGCTCGT
GCTTTGAATGAATGTATCCACACAAGCTGTTTAAAACTGTCTCATGGTCC
ATATCCACTTCATTTCTCATACAAAACAACTCTTTGGCTAGAGTACACTT
TGGGATACCATATGTGGAACAAATCTTTGCCACCATCCTGGACAGCTTAC
TCTTCTAAGTAAATCTAATAACTATTTCTATG
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACTTGAGATCAGAACAGTGATACT
ACTAACCATTCTTTTATTATTCAGGATTGTTTTAGCTATTCTGAGTTTTT
TGTGTTCCCATATAAAGCTGAAAATTTTCCATTCAAGTTCTTTGTAGAAT
AATGTTGGAATTTTGATGGGATTGCTTTGAATCTTTACATTACTTTGATA
GGAATGTCATTTTACTATGTTAATCCTACCATTCCACAAGCCTGGAACAT
CTTTCAATCTTCTGATATCTTCTTCATTGACTTTCTTCAATGTTGGAGCC
GGCCTGTGGCTCTCATGTCTGGGTTCGAGCCTGGGAGGCAACTGGAGCTG
AAAAAGAAGAGCGAATCTAGGTGGGTTGAGAAATAATGGAACCAAGACAC
GCTAGTCTGTTCAAGGTTCCAATGTTTAATTAAAAAGTCTGCTCTTATAA
AGAGGGAAACCCATCCCCTATCACGCCAAGTTTCTTGATGTTGTCAGCAC
AGCCTTTTAGCAGCAATTCGTCAGATTCACAGGTTGTAGTTAACTCTGGA
AAGTCTTGGAGAACCAGTTCAGCCTCACGGCAGATGGCAGGCAATATCAC
ATCAAAAGAAACTATTTGAGTCAGAGAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_o14.b1 MSMg01no068_o14.b1 CHROMAT_FILE:
MSMg01no068_o14.b1 PHD_FILE: MSMg01no068_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:30 2005
         (477 letters)



>mm_chr1_45947663_45948539
          Length = 877

 Score =  632 bits (327), Expect = 0.0
 Identities = 342/347 (98%)
 Strand = Plus / Minus

                                                                       
Query: 131 atagaaggctgataaatgaagatgaaggcggagaatgggatgatacagcccctgccaaag 190
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 877 atagaaggctgataaatgaagatgaaggcagagaatgggatgatacagcccctgccaaag 818

                                                                       
Query: 191 cacactcccagaaaaacctgaccatctaaaagaaagtctagaggtgtatttgcttatgtg 250
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 817 cacactcccagaaaaacctgaccatctaaaaggaagtctagaggtgtatttgcttatgtg 758

                                                                       
Query: 251 ctgatgcatcagtcttgggtttccacccaccagaactgagagacaatacatttctgttct 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 757 ctgatgcatcagtcttgggtttccacccaccagaactgagagacaatacatttctgttca 698

                                                                       
Query: 311 gaaaggtaacacaggctatgcacagcaacgtttggaaacagcaggttgcctgtgccagtc 370
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 697 gaaaggtaacacaggctatgcacagcaatgtttggaaacagcaggttgcctgtgccagtc 638

                                                                       
Query: 371 ccaggtggtgcacataaaaatcttccacccacactaaggacagagtggcatagctcgtgc 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 637 ccaggtggtgcacataaaaatcttccacccacactaaggacagagtggcatagcttgtgc 578

                                                          
Query: 431 tttgaatgaatgtatccacacaagctgtttaaaactgtctcatggtc 477
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttgaatgaatgtatccacacaagctgtttaaaactgtctcatggtc 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)