BAC Information

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BAC

Clone NameMSMg01-068P02
Chromosome1 (Build37)
Map Location 71,402,253 - 71,572,676
singlet/doubletdoublet
Overlap geneAbca12, LOC629101
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900
Downstream geneAtic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068P02.T7 (MSMg01no068_p02.b1)MSMg01-068P02.TJ (MSMg01no068_p02.g1)
ACCAG293319AG293320
length699772
length of high quality
(start - end)
322 (44 - 365)186 (80 - 265)
definitionCHROMAT_FILE: MSMg01no068_p02.b1 PHD_FILE: MSMg01no068_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:32 2005CHROMAT_FILE: MSMg01no068_p02.g1 PHD_FILE: MSMg01no068_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,402,253 - 71,402,565)(71,572,492 - 71,572,676)
sequence
NCCTTATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCG
GAATTCTCCCTAAACCAGAAAGTACCATGCCCACCATGCCCACTTCCTTC
TGTGAGGCTGGGCTGTGGCAGCACCCAGTTAGAATATTGTATGTACCTTA
CTGTTTGTCCTCTGGAAAAATCGCCCAATTTTATTTCACATAGATATTAC
AAGTTGAAATACAACTTCTGTCAAAGATCATTTTATTACCCCTCTCAGAA
AACACAAAAAGGGATAAAAATGAAGCCAGCTTTCCTGAGTAGCATGCTCT
GAGCTCTCTAATGGGCACGATTAGAGAGCATCAGGAGAGGAACATTGCCC
TGTTACTTCACATATTTGATTCCTGCCCCCCTACCTGGCATAACTTCTGC
ATTTTAGGCTGTGACACCTTGGATACCAAAAAGCAAGCATCATGTTACAT
TCACCTCTTCATTTTAGGATCTAATGCAGCCCACCTAGCACTGGACCATT
TGATCCAATGGCTGATTTAATAAAGAGACAGTCGTGCTGGGATGTGGATA
ACACACATTGATTGGAGTTGGGGAAACTAGAAATCTCAGTACTGTTTCTT
CCTAAAGGGATCTCAGATATTGTTTCCCTCATCTGTATGTTAGGGACATG
AACTATTTTGAAACAGGTAAACTAAGCATCCATGTGGGACCCCTCACCA
NNTTAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGGACATAGCTTTGGAAA
TAAAGAAAGGAACATGATTGTAGGAGATGCAAAATCTGTATTCCAGAAAG
GATTTTTGTTTCCTTTCTTTCTCATATAAAGATACCAAGGAGTATGAAGA
TTGGGTCTTTAGGCAGAAGAGAGAGGAGGGAAGAGGAAGGTAAGGGAAGA
AAGGGGAGGGGAGGGATTTTTCTTTCTTTCCCTCTTTTTTTNCTTCCTAT
GTTCTTCTCCATTTTTTTCACCAACAAAACCTTTTGTTACAGCGTGGTTT
CTCATTTCTCAAACGGGAATGGTTTTTTTTTTTTTCCCCCCCCCGCCCCT
CGGTTAGTTTTCTTTTTTCGCGTCTCCTTATTCCGTCCCCTATTAAAAAA
AAAAAAAATACGTTTGGCGGGGTGGGTGCTGTATGTATAGTTCCTTTCCC
TCCTCCTTCTTACTTACTTGTACTTTATTTTTATTTACCTAGTTCTTTCT
TTCTTTATACACTATCCTATCTTTTTGCTTTGCATTTTTCTCATCCCTCT
CTTCTCTCCTTACTATATTCTTTCTCCCCCCACGTACTGCTTTGATCTCC
TCCTTTTTCATTTTGTCTCCATAGAAGAATTCTTTGTGTGTTCCATCCTT
ATATCTTTTCCTATGTTCCTCATATATTGTTACGTTCCTTATCTATCGCT
ATTTTTCTTTCCACTCCTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_p02.b1 MSMg01no068_p02.b1 CHROMAT_FILE:
MSMg01no068_p02.b1 PHD_FILE: MSMg01no068_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:32 2005
         (322 letters)



>mm_chr1_71402045_71402766
          Length = 722

 Score =  582 bits (301), Expect = e-171
 Identities = 310/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 9   aattctccctaaaccagaaagtaccatgcccaccatgcccacttccttctgtgaggctgg 68
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aattctccctaaaccagaaaataccatgcccaccatgcccacttccttctgtgaggctgg 268

                                                                       
Query: 69  gctgtggcagcacccagttagaatattgtatgtaccttactgtttgtcctctggaaaaat 128
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gctgtggcagcacagagttagaatattgtatgtaccttactgtttgtcctctggaaaaat 328

                                                                       
Query: 129 cgcccaattttatttcacatagatattacaagttgaaatacaacttctgtcaaagatcat 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cgcccaattttatttcacatagatattacaagttgaaatacaacttctgtcaaagatcat 388

                                                                       
Query: 189 tttattacccctctcagaaaacacaaaaagggataaaaatgaagccagctttcctgagta 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tttattacccctctcagaaaacacaaaaagggataaaaatgaagccagctttcctgagta 448

                                                                       
Query: 249 gcatgctctgagctctctaatgggcacgattagagagcatcaggagaggaacattgccct 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gcatgctctgagctctctaatgggcacgattagagagcatcaggagaggaacattgccct 508

                        
Query: 309 gttacttcacata 321
           |||||||||||||
Sbjct: 509 gttacttcacata 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_p02.g1 MSMg01no068_p02.g1 CHROMAT_FILE:
MSMg01no068_p02.g1 PHD_FILE: MSMg01no068_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:33 2005
         (186 letters)



>mm_chr1_71572341_71572926
          Length = 586

 Score =  350 bits (181), Expect = e-101
 Identities = 184/185 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttggacatagctttggaaataaagaaaggaacatgattgtaggagatgcaaaatctgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 336 tgttggacatagctttggaaataaagaaaggaacatgattgtaggagatggaaaatctgt 277

                                                                       
Query: 61  attccagaaaggatttttgtttcctttctttctcatataaagataccaaggagtatgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 attccagaaaggatttttgtttcctttctttctcatataaagataccaaggagtatgaag 217

                                                                       
Query: 121 attgggtctttaggcagaagagagaggagggaagaggaaggtaagggaagaaaggggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 attgggtctttaggcagaagagagaggagggaagaggaaggtaagggaagaaaggggagg 157

                
Query: 181 ggagg 185
           |||||
Sbjct: 156 ggagg 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)