BAC Information

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BAC

Clone NameMSMg01-069A04
Chromosome1 (Build37)
Map Location 138,834,923 - 138,835,288
singlet/doubletsinglet
Overlap geneNr5a2
Upstream gene9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818
Downstream geneRnu7-ps3, LOC100042567, LOC100043143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069A04.T7 (MSMg01no069_a04.b1)MSMg01-069A04.TJ (MSMg01no069_a04.g1)
ACCAG293370AG293371
length696690
length of high quality
(start - end)
373 (48 - 420)163 (58 - 220)
definitionCHROMAT_FILE: MSMg01no069_a04.b1 PHD_FILE: MSMg01no069_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:38 2005CHROMAT_FILE: MSMg01no069_a04.g1 PHD_FILE: MSMg01no069_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTCTTATATCATTCTCTGAGTTTGGCACCAGGAAACAGTGTT
AACCAAGTGTTAGATGGTTGGTCTGACTGGATTGTAATGAACAGTCAAAG
CTATACACACTTAAAGTAGCCAAGGAACAAGTGAGTTGTATAAGATGAAT
ATTAAATTGAATGAGATAAAGATATTTTCCCCTAAAGTTTCTAATGAGGT
GGATTTGTCTATAATTTCTTTAAAAACAAAACAACAAAACAAAACATCTG
GTGTGGAGGCATATGCTTGCAATCCTAACACTCAGAAGGTTAAGGAAAGA
GGCTTGTTCTGAGTTCAAGGCCAGCCAGCTTACACTGAGTTCTCTAGGCT
AGCCTGGTTTACAGAATGACACCCTGTCTCATAAATAAAACCACTACGAA
AATAAATAAACAAATTTCTATTAGGTATACCGCTGAAGAGATAGGTTTTA
AAAATCATCAATGAATCAATGGTTGCTTATATGCACACACACACCACTAA
AACGTTACTAGGCACATGAATGCTGCACTCATACGTCATACTTCTTGAGG
CCTGACAAAAGAGTTTTCGTATGTCCTTCCCTTTCAGCTAAGTTCAGGAG
TGCAATTCTTTCCCATAGCCCGTTTTTACCTGTGCTTGAATTGCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCATGGTAGATGACCCATAATGCTAGATGCATTGTTTTATTTTT
TGTTGCTGTGACAAATACCATGACCAAAAGCAACTTGGGAAGGAAGGGGT
TTCTTTCAGCTTACAGTTGTAGTCCATCACTGAGGGAGGTCAGGGCAGGA
ACTCAAGGCTGGAACCTGCAGGCAGGAGCTGGTGCAGAAGCCAGTGGGCA
ATGTTGCTGACTGGCTTGCTATCCATGGCTTACTCAGCCCGCTTTCTTAT
ATGACTCTTATATGGCCCAGGGGTGTAAGTGCCCACCATGTTTTTTTTTC
TCCCCCCCCCCCCCTAATCACAGCAATGCTTCACAAGTTGGTCATCTCCC
CTCAAAACAAAAAAAAGCTAGCGTGGGCGGGGGGACCTCTGATTTCTAAT
AGCTCCTCGCTTAGACTGTCTATCTGTTCCGCGATTGTTTCATTTGTCAT
AACACTAGCCCGCCTGGTCATGCAGTTTTATGCCTCTTATCCCCTCCTTC
CTCATCTTTGCCTTCGTCGTGCTCCCTACTCCCTTCTACCTGCCTTCATA
ATTTATTGATTAGAGTTCATCTTATTTGTTGCCCCTTGACCCTATTTTGG
TCCCTCCCTAAATACCTTCCTTTCATATTTTTTGCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_a04.b1 MSMg01no069_a04.b1 CHROMAT_FILE:
MSMg01no069_a04.b1 PHD_FILE: MSMg01no069_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:38 2005
         (373 letters)



>mm_chr1_138834837_138835609
          Length = 773

 Score =  654 bits (338), Expect = 0.0
 Identities = 360/368 (97%), Gaps = 2/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtcttatatcattctctgagtttggcaccaggaaacagtgttaaccaagtgtt 64
           |||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 452 gaattcagtcttatattattctcttagtttggtaccaggaaacagtgttaaccaagtgtt 393

                                                                       
Query: 65  agatggttggtctgactggattgtaatgaacagtcaaagctatacacacttaaagtagcc 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 392 agatggttggtctgactggattgtaatgaacagtcaaagctatacatacttaaagtagcc 333

                                                                       
Query: 125 aaggaacaagtgagttgtataagatgaatattaaattgaatgagataaagatattttccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaggaacaagtgagttgtataagatgaatattaaattgaatgagataaagatattttccc 273

                                                                       
Query: 185 ctaaagtttctaatgaggtggatttgtctataatttctttaaaaacaaaacaacaaaaca 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 272 ctaaagtttctaatgaggtggatttgtctataatttcttaaaaaacaaaacaacaaaaca 213

                                                                       
Query: 245 aaacatctggtgtggaggcatatgcttgcaatcctaacactcagaaggttaaggaaagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aaacatctggtgtggaggcatatgcttgcaatcctaacactcagaaggttaaggaaagag 153

                                                                       
Query: 305 gcttgttctgagttcaaggccagccagcttacactgagttctctaggctagcctggttta 364
           ||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||
Sbjct: 152 gcttgttctgagttcaaggccagccagtttacactgagttct--aggctagcctggttta 95

                   
Query: 365 cagaatga 372
           ||||||||
Sbjct: 94  cagaatga 87


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)