BAC Information

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BAC

Clone NameMSMg01-069B05
Chromosome1 (Build37)
Map Location 162,438,865 - 162,439,099
singlet/doubletsinglet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneGpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069B05.T7 (MSMg01no069_b05.b1)MSMg01-069B05.TJ (MSMg01no069_b05.g1)
ACCAG293420AG293421
length697698
length of high quality
(start - end)
463 (48 - 510)242 (75 - 316)
definitionCHROMAT_FILE: MSMg01no069_b05.b1 PHD_FILE: MSMg01no069_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:43 2005CHROMAT_FILE: MSMg01no069_b05.g1 PHD_FILE: MSMg01no069_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGC
GGAATTCTTTGTTTATCCCTGTACCCGATTTTTAAATAGGGATATTTGGT
TCTCTAGTGTCTAACTTCTTGAGTTCTTTGTATATACTGGATATTAGCGC
TCTATTGGATGTACGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCC
TTTTTATCTTACTGATAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTT
ATGAGGTCCCATTTGTCCATTCTTGATCTTACAGCACAACACATTGGTGT
TCTGTTCAGAAATTTTTCCCCTGTGTCCATATGTTCAAGGCTCTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGCTTTATGTGGAGGCCCTTG
ATCCACTTGGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCT
ATAGCTGTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAACACAGAAGTGT
ATGCTCACAGTCAGCTATTGTATGGAACACAGGGCCCCCTATGAAGGGGC
TAGAGAAAGTGCCCAAGGTATTAACGTGGCCCGCTACCCTATCGTAGGAA
CATCATTCCTCATCTAACCAGCACCCCCCTAGCTTGCGTTCCCCGCCGCA
TATGCAGCACAATATGTCCTAGTCATCCATTGGGAAAAAAAGTTTTC
NTCATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGATTTCTGAATTCTAGCTAGTTG
CCTATACTTTCATGTATTTCGAGCTGTTGCCTTCCCTTGTGACACCTCTA
GCTGTTTTGAATTTCTTTCTCCAATGTTCTCCCCTGAATTCCTTTGTGTA
TGTTAATAGTAATCTGATTGTCATAATATTTGTAAGGTGTTCATTGTCTG
GACTGACAAGATCTGGAATTTCCCTAGGACGTCAGAAATTTAAATTTTAA
TAGCAAACAAAGCCATGCTTTTAAAGCACTCACTCCCAAAGAAATTCTGC
CCATGGTTTATTTTCTTACATGCTGGTTTCTTAGGATAAGAAACTTGGTC
ACAGCTGTTTTTTACCAATATATAGAAGGTGCTATGTTGTATGTACCATG
TTTTAGTGATTATTTGTTATTAGATTGATGGATCTCTTTACTACAGGAAA
AGATTGATGACGATTCAGTTGTTTTCTAGCTGTCTTTTTCTTATTACATC
TAATGATTTGATTGCCTGACACTGCTTAATACTGCATTTTCTTAATTTGC
TTTTTCTTATCGCATCCTATTATTCCTCACATTATTACTTAATATTTAAC
AACTTCTTTATTCTTGTTAATCATTCCTTAATCCTCTTTATAATTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_b05.g1 MSMg01no069_b05.g1 CHROMAT_FILE:
MSMg01no069_b05.g1 PHD_FILE: MSMg01no069_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:43 2005
         (242 letters)



>mm_chr1_162438658_162439299
          Length = 642

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   tctgaattctagctagttgcctatactttcatgtatttcgagctgttgccttcccttgtg 67
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctgatttctagctagttgcctatactttcatgtatttcgagctgttgccttcccttgtg 383

                                                                       
Query: 68  acacctctagctgttttgaatttctttctccaatgttctcccctgaattcctttgtgtat 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acacctctagctgttttgaatttctttctccaatgttctcccctgaattcctttgtgtat 323

                                                                       
Query: 128 gttaatagtaatctgattgtcataatatttgtaaggtgttcattgtctggactgacaaga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttaatagtaatctgattgtcataatatttgtaaggtgttcattgtctggactgacaaga 263

                                                                  
Query: 188 tctggaatttccctaggacgtcagaaatttaaattttaatagcaaacaaagccat 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tctggaatttccctaggacgtcagaaatttaaattttaatagcaaacaaagccat 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)