BAC Information

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BAC

Clone NameMSMg01-069F06
Chromosome1 (Build37)
Map Location 42,141,538 - 42,321,355
singlet/doubletdoublet
Overlap geneLOC383634, LOC666582
Upstream geneLOC100041441
Downstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069F06.T7 (MSMg01no069_f06.b1)MSMg01-069F06.TJ (MSMg01no069_f06.g1)
ACCAG293611AG293612
length691683
length of high quality
(start - end)
313 (36 - 348)357 (56 - 412)
definitionCHROMAT_FILE: MSMg01no069_f06.b1 PHD_FILE: MSMg01no069_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:03 2005CHROMAT_FILE: MSMg01no069_f06.g1 PHD_FILE: MSMg01no069_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,141,538 - 42,141,846)(42,321,001 - 42,321,355)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTATC
CACATTCCATGAACTGTAAAATGGCAGCTCTCAAAAGCCAGGAAATATTA
TCTCTGTAGCCAGGAGTAAAAGGACCTACTGCTTCTGCCCCTCATTTAGC
TAGAAGCTCTAAGTCTGTGACTGTCTGAGGTCTAATGAGAATCTGTTCTG
AAGCTTGCTATTGCATTCTAGAATGCAGTAACCCTCTAACTTCCTGTACT
CAGTCTTTCTCTCTTGCTTTCCCCCTTGGTGCTGGCAGGAAGAAATTCAT
ATGGTCTATCGGTTTATCTTGTTTCTTGTCTATTCTTCCAAGTGTTGTTT
ATTTTGCCTCCCACCTTCACAGTCTGGAAGGATTCCTGGAATATGGTATG
AACACAGATATTTGTTGAAAGTGGATCTATTGCTTTCTCCAGTTAGCCTT
GAGATAGATGGAAAAAGAAATGAAGAATAGCCTATGGATAAATTAAGACA
TTTCAAGATAAAAACCATACTGTCAAAAGACTGAAAGCATTAATGTGTCT
TGTCAGCACGAAGTGTGCCTGAGAGTGCTAGTAATCAATAATGCATAGCG
TATGGGCAGTTCTTGAAAAGGTTCCCCTATCTGCAGCGAATTATCTAAAG
GAGACCACGCTTCTCTCTAATGTCTTAGGAAGAGCCTGGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCTGCCTTAGGCCAGACTGCATGTGAAACTCTTGCTAGCTGTCCT
TCTTCTGTATTAAAACAGACCTAGATAATGAAATGTGCAAGGCTAGATGA
TGCTTCCCACAAAACAAATAGGAATGTGCCACAACAGACTCCATTACAGT
TGTCAACATTTCTTTCAATGATTGTATTTAGAGCTAGAAGACACACAGAA
GTGCGTGTTTATGGAGTCCATGAACTCAGGGTGTGATATGTTTCAGGTTC
ATCAGATATCACAAAGGGAGGTGGGGTACATTATCCTGATTGCTTTTTTA
CCGACCCCTCCTCCCAAACTCATGGTATCTTAAATCATATTGTAACAAGT
TTCTCTTTCATAGAGAATCCAGATGAGTCCAAAGTGAACATATCAATTAA
TATTCTGTTGCTTAGTACTAACCCTTGGTGCATATTACTCATATCCAGTG
AACTATAGTTTACATATACTAGATCATATATATAATATATAGTTTATATC
AATTAGTTGATATATAAGATTTATCAACTTTTATCTTTCAGATGATCTTG
CTGATTCTCATTAAATAAATAATCTAGTCTCTTTTCATATTCATATGTAT
GCGCCCATTATTTCTAAATATTTATAAACTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_f06.b1 MSMg01no069_f06.b1 CHROMAT_FILE:
MSMg01no069_f06.b1 PHD_FILE: MSMg01no069_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:03 2005
         (313 letters)



>mm_chr1_42141334_42142046
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctatccacattccatgaactgtaaaatggcagctctcaaaagccaggaaatatt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcctatccacattccatgaactgtaaaatggcagctctcaaaagccaggagatatt 264

                                                                       
Query: 65  atctctgtagccaggagtaaaaggacctactgcttctgcccctcatttagctagaagctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctctgtagccaggagtaaaaggacctactgcttctgcccctcatttagctagaagctc 324

                                                                       
Query: 125 taagtctgtgactgtctgaggtctaatgagaatctgttctgaagcttgctattgcattct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagtctgtgactgtctgaggtctaatgagaatctgttctgaagcttgctattgcattct 384

                                                                       
Query: 185 agaatgcagtaaccctctaacttcctgtactcagtctttctctcttgctttcccccttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaatgcagtaaccctctaacttcctgtactcagtctttctctcttgctttcccccttgg 444

                                                                       
Query: 245 tgctggcaggaagaaattcatatggtctatcggtttatcttgtttcttgtctattcttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgctggcaggaagaaattcatatggtctatcggtttatcttgtttcttgtctattcttcc 504

                    
Query: 305 aagtgttgt 313
           |||||||||
Sbjct: 505 aagtgttgt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no069_f06.g1 MSMg01no069_f06.g1 CHROMAT_FILE:
MSMg01no069_f06.g1 PHD_FILE: MSMg01no069_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:03 2005
         (357 letters)



>mm_chr1_42320801_42321557
          Length = 757

 Score =  625 bits (323), Expect = 0.0
 Identities = 347/355 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgccttaggccagactgcatgtgaaactcttgctagctgtccttcttctgtattaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tctgccttaggccagactgcatgtgaaactcttgctagctgtccttcttctgtattaaaa 496

                                                                       
Query: 61  cagacctagataatgaaatgtgcaaggctagatgatgcttcccacaaaacaaataggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cagacctagataatgaaatgtgcaaggctagatgatgcttcccacaaaacaaataggaat 436

                                                                       
Query: 121 gtgccacaacagactccattacagttgtcaacatttctttcaatgattgtatttagagct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 435 gtgccacaacagactccattacagttgtcaacatttctttcaatgattgtatttagggct 376

                                                                       
Query: 181 agaagacacacagaagtgcgtgtttatggagtccatgaactcagggtgtgatatgtttca 240
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggaagacacacagaagtgcatgtttatggagtccatgaactcagggtgtgatatgtttca 316

                                                                       
Query: 241 ggttcatcagatatcacaaagggaggtggggtacattatcctgattgcttttttaccgac 300
           |||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 315 ggttcggcagatatcacaaagggaggtggggtacattatcctgactgcttttttaccgac 256

                                                                  
Query: 301 ccctcctcccaaactcatggtatcttaaatcatattgtaacaagtttctctttca 355
           |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 255 ccctcctcccaaactcatggtagcttaaatcatattgtaataagtttctctttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)