BAC Information

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BAC

Clone NameMSMg01-069J08
Chromosome1 (Build37)
Map Location 69,499,034 - 69,499,200
singlet/doubletsinglet
Overlap genenone
Upstream geneErbb4, LOC667842, EG241084
Downstream geneIkzf2, Spag16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069J08.T7 (MSMg01no069_j08.b1)MSMg01-069J08.TJ (MSMg01no069_j08.g1)
ACCAG293807AG293808
length788825
length of high quality
(start - end)
166 (127 - 292)70 (182 - 251)
definitionCHROMAT_FILE: MSMg01no069_j08.b1 PHD_FILE: MSMg01no069_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:23 2005CHROMAT_FILE: MSMg01no069_j08.g1 PHD_FILE: MSMg01no069_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCCCCCCCCTCTCTTTCCCCCTCCCCTNTCCTTCCCTCCTTCAATTT
ATCCAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGAC
CGCGGAATTCTTGACTTTTCCCAATCAGAGGAGAGCTTAATTGAAAGGAC
TTGATACACCCAATCCGTTTGCACCCAACCAGTTCCCTCCTACGCTTACT
GCACCTTTCCCCGATCTTGAACACTCTCCAGTTCTAGTTAACTTTCAAAT
GCGTTTTGGCATTCTCATCCATCAGCCAATTGAGAGTATAATTGTATAGC
AGCCTGGCCCACTGGAGAGAACGCTGGTTTTATAGCAAACTATATCCTCC
CCGTATTTATTCACCTGTTTATTATTTATATGGCTTATCCTTACTTTGTT
CCGTTTCCCATGTATATATCGTACCCATGGTATCTTTTTTACCACTTATC
CCGAATCGTCTGTCATTCACCATGTGTGACGATTGCCATCGACATATACT
CTATACTATTTCAGGTTATAGCCCAACAATAAAGTTATATTCTTACGCCC
CCTTCGACACCATTATTAATCACCTGGTCCATGCTTCTGTTTTACCTTTT
TTATCCTACTATCCCTCTCCTGCTCCTTATAGTTCCGATTTGTTCCTTCT
TCCCCCCATACGCACCCCCTCATTACCTGCCCTTTCCCTGCCCTTTGACC
CTTCTTTTCCCCCGTTTTCCACTTTTAATTTTTTTTCCCTTTGACCCACC
CTACCCTTTAATTTTTTTCCCTGTTTCCCCTTCCCCCN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCCNCNNCCCAAAATANC
CTAGTCTATGACATGGGTAGCCTGGCGGCCGCCTGGTTCCGACGGGAGGN
GAACNANAGAATTTTCTAAAAGAAAAAGACAACCGGGNAACAAAGGGAGA
NCCAGGCAAGCCAATTTTACCTAGTGAGGTNCTTTTGAAACAAAAAAAGA
TGAGCCAAAGGAATATATCTATGAATAAACCATGGCATTGTTTGCTAGCT
AAATATTCAAAATTAATATTCTCTATTTAAAATGTGATTTCATTTTGAAT
AATGGAGAAATCATGTCGAAATTTCTATTTTTAAAGTTGACTTCCAACTA
ATCAACTTAACACTGTTTTTTTTTTTTGCGCCCCACAACAAACCACACAA
ACGGATTTTTTTTTTTTTCGGCCCCCCCGACCAAATTTCATTGTGACCCC
GCTTTGTTACATGTTTGTCTACCAAAAGAAAAAAAAGTTTACATTTAGTT
TCTGATACTCCTGACTCGCTGGAATAATTTTAGCTTTGTATTACTAAGAT
TGGAGCTACTATTATGCTAACCACTTATCGACCTCAACACGCGTTGTTTT
CCCCCCTTCCTGCCTATTGTTCTTTCACATTGAAATGCCCCATTCCGCGC
GATTCGTTTAATTGATTGTATGTCACTATCAGTGCCACCTTTTTTTGTCA
ACAGTACATTCCCACCAACATTACGAATTCGCGCGTGCACCGCGGTGATT
TAATGGTGACTATATCAACTTAAACTCAACACAACATTCATGTAATGATT
TTTATTGTTATAAACCGCCCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_j08.b1 MSMg01no069_j08.b1 CHROMAT_FILE:
MSMg01no069_j08.b1 PHD_FILE: MSMg01no069_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:23 2005
         (166 letters)



>mm_chr1_69498834_69499400
          Length = 567

 Score =  292 bits (151), Expect = 7e-84
 Identities = 163/167 (97%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggaga-gcttaattgaaaggacttgatacacccaatccgtttgcacccaaccagttc 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggagaagcttaattgaaaggacttgatacacccaatccgtttgcacccaaccagttc 260

                                                                       
Query: 60  cctcctacgcttactgcacctttccccgatcttgaacactctccagttctagttaacttt 119
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cctcctacgcttactgcacctttccccgttcttgaacactctccagttctagttaacttt 320

                                                          
Query: 120 caaatgcgttttggcattctcatccatcagccaattgagagtataat 166
           ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 caaatgcattttggcattctcatccaacagccaattgagagtataat 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 567
Length adjustment: 8
Effective length of query: 158
Effective length of database: 559
Effective search space:    88322
Effective search space used:    88322
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)