BAC Information

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BAC

Clone NameMSMg01-069J20
Chromosome1 (Build37)
Map Location 27,182,909 - 27,183,143
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik
Downstream geneLOC677427, LOC100040952, EG433281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069J20.T7 (MSMg01no069_j20.b1)MSMg01-069J20.TJ (MSMg01no069_j20.g1)
ACCAG293831AG293832
length778798
length of high quality
(start - end)
235 (180 - 414)87 (128 - 214)
definitionCHROMAT_FILE: MSMg01no069_j20.b1 PHD_FILE: MSMg01no069_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:25 2005CHROMAT_FILE: MSMg01no069_j20.g1 PHD_FILE: MSMg01no069_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTCTCCCCCTCTTTTTTTCCCCTCNTCCTCTTTTCCCCCTTCTATCT
CTTAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGTACC
GCGGAATTCAATAATTGCATAAACAGGTTGATTAATTAAAAACATTATTT
CAGAGCATACTTCAAGCAAGTCATTGAAGAAATTTGAAATCTGTGATGTT
AGTAAACAATGAAAATAAATAATTCTTCTCAGGGAAAGAATTAAAACAAT
TACATAACCAGGTTGATTAATTAAAAACTCACTATCATCTCATACTATTG
CAAGCAAGAGTAATTGAAGAAAGTGATAAAGCACTGAAAGTTAAGACTAT
TGCACTTATGTTTGCACTGTATTTGTCTTCAGACACACCACAGGAGGGCA
CCGAATCCCATTACTTTATGGCTATGAGCAACCATGCTGTTGCTGGGAAT
TGAACTCAAAACCTTTGGGAAATCAGTTGGAGCTGTTGCTGGCAATTTAA
TTCAAGACCTTTGGTAAAGCAGTTGCAGCTGTTAATTGCTGAGCCAACTC
TCTAGTCACTGAAAGTTAAGACTATTAAATATATATTCCTACAAAAGATG
AAGTAATTTATTCTCATGCATTCCAATGTAAAAATATTATCTTCTATGAA
CCTAAACATTACAAGAACTTCTGTATCTTTATCGTACCTTAATCTATGCT
TATCACCTTATTTCACTTACTTTTTTCACCCTTACTCAACATTACCTTTT
TTTTATATCCTATTTCCTAATACCTTAA
TTTTTCCTTTCTTTTTTTTTTTTCCTTTTTTCCCCCCTTTCCCGACTTCA
TACTCTATGCTACGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGATTGCGTGGCTGGTGTTG
TGGGTATCTGGCGGTAGTTGGTAGTCAGCCGACTCTGCGCCCTAGCTACC
CCGGTGCTGCTCGGACCGATAGGGGCTTGTGCCCCTACTCCGATCAGGTT
TTCTGCTTCCCTGACTAATGCAGTCTCTTGTCCCGCACGATTGGATTGTA
TCTCATGCTGTGTCCTACTCACCATAAGTCTTATGATTGCTCTGGTGTCG
TTGTGTTTAGCTGCTGGTATTTTGATGACTGTGCGCTCTAGCTATCCGGG
TGCAGCCTATTTATTTTTTCTTCACCCTTCCGGCTAGATTGATTACCGAC
CGCTCTGATGGGCATTGTCTTGCCCCTGCAGATTAGACGTGCTCTTATTT
CATCACATACATGGCAGCTCACTTATGTTTGTTTTTCTTTCTCAAGGGAT
CCAATGTCCTTCTTCTCTCCTCTGTGGTATATGCCTTTCTTACGCCATAT
CGACCTATTATGCTTGCCATTACCATTCCCTTTACCCCATATTCTTTCTA
CTTTCTTTGCTCCCGGTATATTCACCCTTTGCTTTGTCCCTTTCCCACCT
TCTCATCAACTTTTTTCTGCACTCTTGTTATTTTGCTTCTTGCTGGTTGT
TGTTCTCGCCCCCACTTATTTTCTTGTATCCTATTTTCCCTCACCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_j20.b1 MSMg01no069_j20.b1 CHROMAT_FILE:
MSMg01no069_j20.b1 PHD_FILE: MSMg01no069_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:25 2005
         (235 letters)



>mm_chr1_27182771_27183405
          Length = 635

 Score =  369 bits (191), Expect = e-107
 Identities = 224/235 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatttgaaatctgtgatgttagtaaacaatgaaaataaataattcttctcagggaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 373 aaatttgaaatctgtgatgttagtaaacaatgaaaataaataagtcttctcagtgaaaga 314

                                                                       
Query: 61  attaaaacaattacataaccaggttgattaattaaaaactcactatcatctcatactatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 313 attaaaacaattacataaccaggttgattaattaaaaactcactatcatctcatagtatt 254

                                                                       
Query: 121 gcaagcaagagtaattgaagaaagtgataaagcactgaaagttaagactattgcacttat 180
           |||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 253 gcaatcaagagtaattgaagaaagtgaaaaagcactgaaagttaagactattgtacttat 194

                                                                  
Query: 181 gtttgcactgtatttgtcttcagacacaccacaggagggcaccgaatcccattac 235
           |  |||||||||  ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 193 gggtgcactgtagctgtcttcagacacaccacaggagggcaccaaatcccattac 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)