BAC Information

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BAC

Clone NameMSMg01-069L16
Chromosome1 (Build37)
Map Location 126,610,791 - 126,611,000
singlet/doubletsinglet
Overlap genenone
Upstream geneDpp10, LOC666998
Downstream geneActr3, Slc35f5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069L16.T7 (MSMg01no069_l16.b1)MSMg01-069L16.TJ (MSMg01no069_l16.g1)
ACCAG293918AG293919
length642762
length of high quality
(start - end)
---210 (133 - 342)
definitionCHROMAT_FILE: MSMg01no069_l16.b1 PHD_FILE: MSMg01no069_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:34 2005CHROMAT_FILE: MSMg01no069_l16.g1 PHD_FILE: MSMg01no069_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATATTCTCAAGACAGGTGGGTAATTGTGATGGGTTTGATATCCTTGGA
CCAGGGAGTGGCACCCTCTGGAGGTGTGGTCTTGTTAGAATAGGTGTGAC
CTGCTTGGAATGGGTGTGTCATTGTGGGTGTGCGCATAAGATCCTCACCC
TAGTTGTCTGGAAGTCAGTCTTCCACTAATAGTCTTTGGATGAAGACATA
GAACTCTCATCTCTTCCTGTGCTATGCCTGCCTTGATTCTGTCATGCTAC
CACCTTGATAATGTTTTGAACCTCTGAACCTGTAAACCAGCGACAATTAA
TTGTTGTTTTCCACAACACTTGCCTTGGTCATGTTGTCTGTTCTTAGCAG
TACAACCCTACTACAGTAATAAAGTGCATTCTGCGCGAGTCTATGATGCC
TATGTAATGCCGTCTCTTTTTGATAATCTAGCTTCCATATTCATTATCTA
GATTCATCAGAGATGTTCATTGGCGAATTTTAGGACTATCATCCTCCACC
AAAATCTGCCCTTATTTTCATCAGCCACGCTCACTCTGATCCTTCAATAC
TTTCACTGCCGTTAATCGTTGTTCCCCTTCTCCACCCTTATTTTTTCCTT
TTCCCCCCTTTCCCTTTTTATTTTTCCCCTTCACCCCCCCCT
ATTTTCTTTTTCTTTTTTTTTTTTTTCTTTTGTCCCCCTTTTTCTCAATT
CCNNNNNTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCTTGCCATATGCAA
ACAAGCACTCTAGCAGCTGACCTGAATCTGCTGCCCTGACCCAGAGTTCT
TTTCTGGCCCCTTACTGACTTTGGCTTGTCAAAGATTTTAAATATACCTT
AAGTAGATCAAGCATCTTCTGACTGTTAGACACTGGATCATTCACATTAA
TTTGCTCTTCAGGTTTAACTATTTGTTACCATTTCCAGCTGAAAGCAACA
CATAATAGCTAAAAAGAACTGTAATATTTTAACTACTATAGAGATGAGAT
GGAGCTAAGGTGTTTCTATCAAGTCTATGGCTACTTCTAAGGTTTGCAAA
GGATCATAGGTGATAGGCTTGACCCTTACAAGAGATAACAATAATTATAG
AAAAGAGTGCCAAGATTGTAAATGAAGACCTTTCACCACATTGCCTGTGA
TTGGTCATGGGGGACAGATGGAAGCTTTCAGATTACCCGCGTTACCCATA
TTGTATTGCATACTCTGTTATTGCACACTACATCATATGTCCTGTTCAGG
TTTAGCCCCCTATTTCACCTTGTTTACAGGAATTGCCTAATACTGGACCC
TGTTTATGGGCTGAAAGTGTCCACCATGACCTGTGAATGTCAATATTTTT
GATACGCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_l16.g1 MSMg01no069_l16.g1 CHROMAT_FILE:
MSMg01no069_l16.g1 PHD_FILE: MSMg01no069_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:34 2005
         (210 letters)



>mm_chr1_126610591_126611200
          Length = 610

 Score =  406 bits (210), Expect = e-118
 Identities = 210/210 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggcttgccatatgcaaacaagcactctagcagctgacctgaatctgctgccctgaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agggcttgccatatgcaaacaagcactctagcagctgacctgaatctgctgccctgaccc 351

                                                                       
Query: 61  agagttcttttctggccccttactgactttggcttgtcaaagattttaaatataccttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agagttcttttctggccccttactgactttggcttgtcaaagattttaaatataccttaa 291

                                                                       
Query: 121 gtagatcaagcatcttctgactgttagacactggatcattcacattaatttgctcttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gtagatcaagcatcttctgactgttagacactggatcattcacattaatttgctcttcag 231

                                         
Query: 181 gtttaactatttgttaccatttccagctga 210
           ||||||||||||||||||||||||||||||
Sbjct: 230 gtttaactatttgttaccatttccagctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)