BAC Information

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BAC

Clone NameMSMg01-069O03
Chromosome1 (Build37)
Map Location 87,565,119 - 87,565,360
singlet/doubletsinglet
Overlap geneSp100
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140
Downstream geneA630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O03.T7 (MSMg01no069_o03.b1)MSMg01-069O03.TJ (MSMg01no069_o03.g1)
ACCAG294036AG294037
length685691
length of high quality
(start - end)
167 (111 - 277)242 (72 - 313)
definitionCHROMAT_FILE: MSMg01no069_o03.b1 PHD_FILE: MSMg01no069_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:45 2005CHROMAT_FILE: MSMg01no069_o03.g1 PHD_FILE: MSMg01no069_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACGACTCCTATTTCCAGAGGATCCGCGGAATTCTCTTATT
TCGCCTTGGTGTAGTTGGGGTGGGGATCTGAGTTACAGTCTTTTTCCTGG
CTTCATTCCCCACCGCTTCCTGTCTCAAGGGTGTATCCCAAATAAGTAAC
TTCAGTTTGACATAGCTGAGCCTTTTTAGCTGAGGCTCGCGGTACCCCAA
CTCACCTTATTCTGTTAAGCACATTGGTCTTCTGTTGCCCAGGTTCCCTG
TCTGTCTAGGTCCTGTCTTTTCTTTCTCTCCTACCACTGTGGTCAAAATT
CTTTTTTTGATTCTTTCTTGCCTACGATCCCTCCTATATTTTTTTTTTTT
TGCCCCCCCCCCCCCCCTCTCTTTTCTGCATCCCATCTTCAGTCTATCGC
CTCCCACTAAAAAAAAAACATATGTTTCTCGCGGCATCATTACTCGTCCC
CTCCTTATATTAATTTCACGTTACTTTTTCATACATCCCGTATTTGTCTA
TTTTCGTTTCCTTCCTTCATACTTATCACTTTATTGTACTTCCATCTTTT
TTTTTTATTCCCTTCTCTTATTTGATCATTTTGCCCATCCTTTCCTACCC
TATTTCTGTTACCTTCTTTCCCTGCTAGCCCATTTCCATAGCCCCTTTTC
CCGTGTTACCCCTTATTTCTCCCTTTTCCTCCTTT
TTTCGATGATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTACCCACGAAATTCTTCCTGAGTGTATGGTCTGGAACAA
CTCTATCTGGAAATGGCATCCTAATGATGTCCATGGCAGGGTTCAATAAA
TAACAATCCACTCAGATGGGCTGAAGAGTGAACAATTAGCCATCGATCTG
TATATCAATCCAATAGTCTGAGCCAACAGAGACAGGGACTGTGGTGCACA
CTCATGGGGTAAGGACTGTAATCAACCCATGACCCTGAAAGGCAGCTCTA
ACCTGTAGATTGGTATTTATAGTACACAGCCAGGGCCACATCCCATGATA
AGGCTTTTATTTCAATTCCCCTTCTCTGGAACTTACCTTTTTTCTTTTTC
TAGCAATCACTATCCATATAAATAAAAATGCATATGTACTGCTTACTACT
ATTATCCATTCCTTTCCTTGTCGCTTTCACTTTACTATTTCGTTTCGTTA
TCGCTGATTTTGCTTTTCCCCCTCGTTTGTTCTTTGTTCTTTAAAGTATT
TCCTGTCCGTCCTAGACTTCGTCTTCCTTCGCCTCCTGCCTTCTATCTCG
TTCACGTCCTTCTTTACAACCTGCTTTCCCCTTCCTTTTCTTCTTTTCCC
CTTTTCTTTCTTTTCTCCTTTTCCCTCCTTTTCCCCCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o03.g1 MSMg01no069_o03.g1 CHROMAT_FILE:
MSMg01no069_o03.g1 PHD_FILE: MSMg01no069_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:45 2005
         (242 letters)



>mm_chr1_87564919_87565560
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttcctgagtgtatggtctggaacaactctatctggaaatggcatcctaatgatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttcctgagtgtatggtctggaacaactctatctggaaatggcatcctaatgatgtc 260

                                                                       
Query: 61  catggcagggttcaataaataacaatccactcagatgggctgaagagtgaacaattagcc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catggcaggattcaataaataacaatccactcagatgggctgaagagtgaacaattagcc 320

                                                                       
Query: 121 atcgatctgtatatcaatccaatagtctgagccaacagagacagggactgtggtgcacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcgatctgtatatcaatccaatagtctgagccaacagagacagggactgtggtgcacac 380

                                                                       
Query: 181 tcatggggtaaggactgtaatcaacccatgaccctgaaaggcagctctaacctgtagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatggggtaaggactgtaatcaacccatgaccctgaaaggcagctctaacctgtagatt 440

             
Query: 241 gg 242
           ||
Sbjct: 441 gg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)