Query= MSMg01no070_b11.b1 MSMg01no070_b11.b1 CHROMAT_FILE:
MSMg01no070_b11.b1 PHD_FILE: MSMg01no070_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:02 2005
(372 letters)
>mm_chr1_30838455_30839226
Length = 772
Score = 650 bits (336), Expect = 0.0
Identities = 360/368 (97%)
Strand = Plus / Plus
Query: 5 gaattctttggtttacgtttttgtgttgatgagggaagtggtagattcaacgaggttggt 64
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgggctatgtttttgtgttgatgagggaagtggtagattcaacgaggttggt 264
Query: 65 tttatcatttatctgtgagctgtatgtgtacatgggatgtataaccgagtccacaataag 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttatcattcatctgtgagctgtatgtgtacatgggatgtataaccgagtccacaataag 324
Query: 125 ctaaaaggctataaaatattatgtagggcattttttaatgttagaactgagcttggggaa 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaaaaggctatgaaatattatgtagggcattttttaatgttagaactgagcttggggaa 384
Query: 185 agtactggaattgtacaaacaagtgacagaaattagctccactgtaatgagagatttcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtactggaattgtacaaacaagtgacagaaattagctccactgtaatgagagatttcta 444
Query: 245 tgttagatttatgatgcttttacctgctgtgaaatcttgctaatgtttgtgggcttgtca 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttagatttatggtgcttttacctgctgtgaaatcttgctaatgtttgtgggcttgtca 504
Query: 305 gttttccttgtcttccctgctatgtgtgggatatattttcatccatctaggaagagctgt 364
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 505 gttttccttgtcttccctgctatgtgtggaatatattttcatccatctaggaagagctct 564
Query: 365 gtgtagct 372
||||||||
Sbjct: 565 gtgtagct 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_b11.g1 MSMg01no070_b11.g1 CHROMAT_FILE:
MSMg01no070_b11.g1 PHD_FILE: MSMg01no070_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:02 2005
(557 letters)
>mm_chr1_30944800_30945757
Length = 958
Score = 855 bits (442), Expect = 0.0
Identities = 502/522 (96%), Gaps = 1/522 (0%)
Strand = Plus / Minus
Query: 1 atctttccagagaacactattgaaataggtagtttgacaaaaccatggagtaaaactgcg 60
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 722 atctttccagagaacgctattgaaataggtagtttgacaaaaccatggagtaaaactgag 663
Query: 61 tccaacggatgagaataaggaaacaattaagctaagccaggggacaaagtttgtccagat 120
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 662 tccaacggatgagaatatggaaacaattaagctaagccaggggacaaattttgtccagat 603
Query: 121 agaggcaggaaccagactgtctgtcaatagatagtaatgtgcagaatggatattgctcag 180
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agaggcaagaaccaaactgtctgtcaatagatagtaatgtgcagaatggatattgctcag 543
Query: 181 cacatcctaaaaaactattgttcttttatcagtaaaacaaaagggaagcaatcacaaata 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 542 cacatcctaaaaaactattgttcttttatcagtaaaacaaaagagaagcaatcacaaatt 483
Query: 241 gctaaattatttctgagaatgatggcttaaatgtaaagcaaactaaacatagaatgactt 300
|||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 482 gctaaaagatttttgagaatgatggcttaaatgtaaagcaaacttgacatagaatgactt 423
Query: 301 taacagctaagtgaatcttaaaacggaaggtatttttacttaatgcttggaatgttgttt 360
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 422 taacagctaagtgaatcttaaaatggaaggtatttttacttaatgtttggaatgttgttt 363
Query: 361 gactggtatagggttgtaaaattcagtttttaacaaagaaaaatcttatttgacttcaca 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gactggtaaagggttgtaaaattcagtttttaacaaagaaaaatcttatttgacttcaca 303
Query: 421 tcatattaaaag-tattaacataatcatgctatatactattttgtataacattataaaaa 479
||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 302 tcacattaaaaaatattaacataatcatgctatatactattttgtataaaattataaaaa 243
Query: 480 tcattttacacaaaatacccccatttcatttcattatactga 521
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tcattttacacaaaatacccccatttcatttcattatactga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
