BAC Information

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BAC

Clone NameMSMg01-070E03
Chromosome1 (Build37)
Map Location 46,831,960 - 46,832,406
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
Downstream geneSlc39a10, EG227061, LOC666869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070E03.T7 (MSMg01no070_e03.b1)MSMg01-070E03.TJ (MSMg01no070_e03.g1)
ACCAG294322AG294323
length666683
length of high quality
(start - end)
480 (31 - 510)444 (75 - 518)
definitionCHROMAT_FILE: MSMg01no070_e03.b1 PHD_FILE: MSMg01no070_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:15 2005CHROMAT_FILE: MSMg01no070_e03.g1 PHD_FILE: MSMg01no070_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCCGCTATACACTCACTATATTCAGAGATCCGCGGAATTCTCAACTGATG
ACATCGAATTCCTGAGAAGCACCTGAAAAATGTTCAGTATCCTTAATCAT
CAGGGAAATGCAAATCAAAACATCCCTGAGATTCAACCTCACACCAGTCA
GAACGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGATGAGAATGT
GGGGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACA
ACCACTCTGGAAATCAGTCTGGCGGCTTCTCAGAAAATTGGACATAGTAC
TACCGGAGGATCCCGCAACCTTCTGGGCATATATCCAGAAGATGTTCCAA
CCGGCAAGAAGGACACATGTTCCACTATGTTCGTAGCAGCCTTATTTATA
ATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATAGAT
ACAGAAAATGTGGTACATTTATTTACACAATGGAGTACTACTCAGCAATT
GAAAAGAATGAATTCATGAAATTCTTAGGCAAATGGATGGACCTGGAGGG
CATCATCCTGAGTGAGGTAACCCAAACACAAAGGAACTCACACAATATGT
ACTCCCTGATAAGTGGATATTAGCCCAGATACTTTTAATACCCAAGATAT
TGGATAACATTTGCGA
NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGAAACTGCTTTATGGCCTCTGTTT
CTTTCATGCTTTGGTACAAGAGAGACGAAAATTCGGACCCCTTGGGTGGA
ATATTCCTTACGAATTCAATGAGACAGATCTAAGAATCAGTGTGCAGCAA
CTCCACATGTTCCTGGACCAGTATGAGGTACCACAAACATCACAGCAAGA
GCCTCACCTGTTATACTCTTTATCATGTTCTAAGTGTTGGTGCAGTGAGC
AGGGACTTATGACTAATTCTGTTCTTATGGAATAAATTGGAAGGCAGTTC
CCAATAGCCTATTAAATAGTACATTATTATAACAGGAAATTATAATTGCT
TTAGGAGCTAGTTAGGATGTTCGTTTGTCTCTTAGGAGCCTGTGTTTTAT
CATGTATTTTCACACAGCCACCTGTGGAGGTTTAAACAGTAATGATGTTA
TATTTATCATGAAAATAGTATAAATCAGCTGGGTTAGGAAGTGTTTTAGG
GCAGAAGGATGACCAGTTTTCTCTTCTGGAGCGTAATTCTTTTTTTGAGA
AGAGAAATCTTTAATTTTGAGCCTGGAAACCAACTATGTTATACGAATTT
ANAATGCGTAGCGTAGCTGGTAAGGTAGTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_e03.g1 MSMg01no070_e03.g1 CHROMAT_FILE:
MSMg01no070_e03.g1 PHD_FILE: MSMg01no070_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:15 2005
         (444 letters)



>mm_chr1_46831760_46832606
          Length = 847

 Score =  746 bits (386), Expect = 0.0
 Identities = 432/448 (96%), Gaps = 5/448 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaactgctttatggcctctgtttctttcatgctttggtacaagagagacgaaaattc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaaattgctttatggcctctgtttctttcatgctttggtacaagagagacgaaaattc 260

                                                                       
Query: 61  ggaccccttgggtggaatattccttacgaattcaatgagacagatctaagaatcagtgtg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacccctagggtggaatattccttacgaattcaatgagacagatctaagaatcagtgtg 320

                                                                       
Query: 121 cagcaactccacatgttcctggaccagtatgaggtaccacaaacatcacagcaagagcct 180
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct: 321 cagcaactccacatgttcctggaccagtatgaggtactacagacatcacagcaagggcct 380

                                                                       
Query: 181 cacctgttatactctttatcatgttctaagtgttggtgcagtgagcagggacttatgact 240
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 cacctgttatgctctttatcatgttctaagtattggtgcagtgagcagggacttatgact 440

                                                                       
Query: 241 -aattctgttcttatggaataaattggaaggcagttcccaatagcctattaaatagtaca 299
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 taattctgttcttatggaataaattgcaaggcagttcccaatagcctattaaatagtaca 500

                                                                       
Query: 300 ttattataacaggaaattataattgctttaggagctagttaggatgttc-gtttgtctct 358
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 501 ttattataacaggaaattataattgctttaggagctagttaggatgt-cagtttgtctct 559

                                                                       
Query: 359 taggagcctgtgttttatcatgtatttt--cacacagccacctgtggaggtttaaacagt 416
           ||||| ||||||||||||||||||||||  |||| ||||||||||||| |||||||||||
Sbjct: 560 taggaacctgtgttttatcatgtattttggcacatagccacctgtggatgtttaaacagt 619

                                       
Query: 417 aatgatgttatatttatcatgaaaatag 444
           ||||||||||||||||||||||||||||
Sbjct: 620 aatgatgttatatttatcatgaaaatag 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 847
Length adjustment: 10
Effective length of query: 434
Effective length of database: 837
Effective search space:   363258
Effective search space used:   363258
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)