BAC Information

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BAC

Clone NameMSMg01-070E08
Chromosome1 (Build37)
Map Location 90,784,382 - 90,784,659
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
Downstream geneLOC208347, Sh3bp4, LOC383542, EG665688, Centg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070E08.T7 (MSMg01no070_e08.b1)MSMg01-070E08.TJ (MSMg01no070_e08.g1)
ACCAG294332AG294333
length889659
length of high quality
(start - end)
42 (174 - 215)282 (55 - 336)
definitionCHROMAT_FILE: MSMg01no070_e08.b1 PHD_FILE: MSMg01no070_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:16 2005CHROMAT_FILE: MSMg01no070_e08.g1 PHD_FILE: MSMg01no070_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCGCGGGCGCGACGGCGNAATCCCCCCCGNGNGNGNNNNGTTTTTTAAA
TAGAAGGGGGGGNTATTAAAATAATTGTTGGGGGGGTATTAGAGGTGTTG
GGGNNNNNNNNNNNNNNNNNNNNTTTTNATAGTTACCAGGATACGCGNGA
TTCTTTTTTGTCTCAGCAGGAGAGGCTCTTTTTTCTCCTACTGTACAAAG
GCTTCCATCCAAGCTACCCCTTTCAATAACAAAAAATAATGTATATATAT
AGAGAATGATCAAGAATCATGTTAAATGTACTCTACGCATGGTTTTAGAT
ATCTATCATATATTGCTACTTGCTCTGTAATGCATACGGCACACCCAGGA
ANTTAAAATATAGTAAAACACAGCAAGTTAGAACAGTCCTCGAGCCCATG
AAAAGCGAGTAGTAACCGCTAAATAAGGAGCTATCGCTAATTCTTAGCGA
ACTCTTAAATGTACATTAAACCCTATCATAGATTCCTCGCCAGAGTCATT
TTATGTACTCACTTAGTCCGTGTTCTTGTCCTTAACCCGTGTTCCTTTCA
TTGCCCAACTCATTTTGACACAGAGAATGCCCGCAAACAAAGTTCACATT
GTTGAACCTGCAGGTCCTGAGTCGAGCGACCGTTCAAAAGAAACACCTTT
TAGAACTTTGCTCACCATGCCATAAAACGCCTCTAGGAGATTGATGAGGG
AAGATTCACATTTACCCTCTATGGTTCGATCCATAACACCCCCGCCGAAA
ACTTGGTGAAGGGCCCTAAAACACCCAGACCCACTATACTGAAACATGTA
CAGTGAAATCCCTAGGGCTCGGAAGAAAAAAAACTACTCCCCGAAGATCC
CCGGCGGGCCAAACACAGGCCGCTGGAAACCTGGGCAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCCATGCTCAGAGAGGGTTCTGAGCTCCCTCTAAAGACTCTTTTTC
ACGCCTGCAAGTCTCTCTCTGTATCTGGGATGACTTCAGATGGACGTCTA
GGTTGGTGGTCATTGCTACAGATGGAGCATGCCTGAACCCCACCTAGTGA
GCAGTAGGCCTGGTGCTGTTTCTTTCCTGAGCTTGGGAAAGCTCAGCACC
ACTGGTATCAACTGGCTCCTGGGGAATGGAAGTCCTAAGATGAGGGATGT
AGGTAGAGTGAAGTCAGAAATCCTCCCTTCCAGATTATTTTTTCTCAACC
TGCGCCTCGAAATCACTTTGGCACACCTCTACCTCTAAAAATATTTTCAT
TTTGATTATATAACAGTAGCAAAATTACAGTCATAAAATGACAATGAAAA
TAATTTTATGGCGGAGGGTGGGAAGGGGCCACCACAACACGAGGAACTGT
ATTAAAGAGTCCCTGCATTAGGGAGGGTGAGAACCACTGTTCTAGAGACT
CCCCGCTACTGCAATTGTGAGATTTAGAGGCACAAATTTTTAAAAATGAG
GCCTAGCTGGAAAGGCAGAGAGAGGTTTAAGAACCTTTAATTTCATGTTT
TGAAAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_e08.g1 MSMg01no070_e08.g1 CHROMAT_FILE:
MSMg01no070_e08.g1 PHD_FILE: MSMg01no070_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:16 2005
         (282 letters)



>mm_chr1_90784180_90784861
          Length = 682

 Score =  491 bits (254), Expect = e-143
 Identities = 272/278 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   catgctcagagagggttctgagctccctctaaagactctttttcacgcctgcaagtctct 62
           ||||||||| |||||||||||||||||| |||||||||  ||||| ||||||||||||||
Sbjct: 480 catgctcagggagggttctgagctccctataaagactccctttcatgcctgcaagtctct 421

                                                                       
Query: 63  ctctgtatctgggatgacttcagatggacgtctaggttggtggtcattgctacagatgga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctctgtatctgggatgacttcagatggacgtctaggttggtggtcattgctacagatgga 361

                                                                       
Query: 123 gcatgcctgaaccccacctagtgagcagtaggcctggtgctgtttctttcctgagcttgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcatgcctgaaccccacctagtgagcagtaggcctggtgctgtttctttcctgagcttgg 301

                                                                       
Query: 183 gaaagctcagcaccactggtatcaactggctcctggggaatggaagtcctaagatgaggg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gaaagctcagcaccactggtatcaactggctcctggggaatggaagtcctaagatgaggg 241

                                                 
Query: 243 atgtaggtagagtgaagtcagaaatcctcccttccaga 280
           |||||||| |||||||||||||||||||||||||||||
Sbjct: 240 atgtaggtggagtgaagtcagaaatcctcccttccaga 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)