Query= MSMg01no070_e23.b1 MSMg01no070_e23.b1 CHROMAT_FILE:
MSMg01no070_e23.b1 PHD_FILE: MSMg01no070_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:19 2005
(503 letters)
>mm_chr1_154637692_154638598
Length = 907
Score = 700 bits (362), Expect = 0.0
Identities = 454/496 (91%), Gaps = 21/496 (4%)
Strand = Plus / Minus
Query: 6 ggaattctttccagtggcggtgtggtatgcacttcaggcccagggtccaatgtttagatg 65
|||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 496 ggaattctttccaggggtggtgtggtatgcacttcagacccagggtccaatgtttagatg 437
Query: 66 tgggacatgcctcagaggcagtgaagacagatgtgaagagagcagtgaccaaattagccg 125
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 436 tggaacatgcctcagaggcagtgaagacagatgtgaagagagcagtgaccaatttagccg 377
Query: 126 tctaagggcttccctgtaggtgggcagat----gagggtccagctagggatgtaataggg 181
|||||||||| ||| ||||||| |||||| ||||| |||||||||||||||||||||
Sbjct: 376 tctaagggctccccagtaggtgtgcagatgagggaggggccagctagggatgtaataggg 317
Query: 182 cagaggtttagaattccttcggggcagcaggaagctggtgcgaactctcccaataccagt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cagaggtttagaattccttcggggcagcaggaagctggtgcgaactctcccaataccagt 257
Query: 242 tcctctccgaaggcttaatgtactttgtgggcatcagttcattgtttctaacaacaacaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcctctccgaaggcttaatgtactttgtgggcatcagttcattgtttctaacaacaacaa 197
Query: 302 caacagcagcagcagcagcagcagcaat------gctgataactaaaga--------caa 347
||||| || || || || || || ||| ||||||||| ||||| |||
Sbjct: 196 caacaacaacaacaacaacaacaacaacaacaacgctgataaccaaagagctttccccaa 137
Query: 348 tgagccttggagtctgtaacttgttcaaggtttgtgaccttaaatatgactgggacctgt 407
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 136 cgagccttggagtctgtaacttgttcaaggtttgtgaccttaaatatggctgggacctgt 77
Query: 408 cagcttgcaaagctggcgctctgtgaaagcgagcgagacggaga---ccactctcaaagc 464
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 76 cagcttgcaaagctggcgctctgtgaaagcgagcgagacggagaagaccactcccaaagc 17
Query: 465 actgcacccagtcacg 480
||||||||||||||||
Sbjct: 16 actgcacccagtcacg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 907
Length adjustment: 10
Effective length of query: 493
Effective length of database: 897
Effective search space: 442221
Effective search space used: 442221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_e23.g1 MSMg01no070_e23.g1 CHROMAT_FILE:
MSMg01no070_e23.g1 PHD_FILE: MSMg01no070_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:20 2005
(500 letters)
>mm_chr1_154542524_154543423
Length = 900
Score = 951 bits (492), Expect = 0.0
Identities = 498/500 (99%)
Strand = Plus / Plus
Query: 1 ctcccagcagagcactctccttagaactctatctcacaagatctagctgttttggctcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccagcagagcactctccttagaactctatctcacaagatctagctgttttggctcac 260
Query: 61 ctgaaccctgacctcttgacctctatcgtcacatttaagcacaacacaggctctgtctga 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ctgaaccctgacctcttgacctctatcggcacatttaagcacaacacaggctctgtctgc 320
Query: 121 ggctcactctctgaagcaaagtttaaaagccgcctagaaggggcgggccagtgccaggat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctcactctctgaagcaaagtttaaaagccgcctagaaggggcgggccagtgccaggat 380
Query: 181 ggtctggttctcgcgctgtgtccatcttgagggctcagtcctttgatgtctgacatggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtctggttctcgcgctgtgtccatcttgagggctcagtcctttgatgtctgacatggat 440
Query: 241 ttgagggagtgggttgggaggggactctattcgtcctcgtgctagaaatgaaagtctgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgagggagtgggttgggaggggactctattcgtcctcgtgctagaaatgaaagtctgtg 500
Query: 301 tgggtgtttctgcttttaaaagaaaaagttaaaaatatatatattattttaagtgcctat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggtgtttctgcttttaaaagaaaaagttaaaaatatatatattattttaagtgcctat 560
Query: 361 aatttgcatagaactctatatagcacaagacaatttccaaaacacaattgttaactaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatttgcatagaactctatatagcacaagacaatttccaaaacacaattgttaactaaga 620
Query: 421 aatcaaataaagaatggtataaattatgtaatatgaaaaactgatatatatgtctgacca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatcaaataaagaatggtataaattatgtaatatgaaaaactgatatatatgtctgacca 680
Query: 481 tgtaattagtgaagaattcc 500
||||||||||||||||||||
Sbjct: 681 tgtaattagtgaagaattcc 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
