BAC Information

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BAC

Clone NameMSMg01-070F09
Chromosome1 (Build37)
Map Location 190,893,091 - 190,893,327
singlet/doubletsinglet
Overlap genenone
Upstream geneEsrrg, Ush2a, Kctd3
Downstream geneKcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070F09.T7 (MSMg01no070_f09.b1)MSMg01-070F09.TJ (MSMg01no070_f09.g1)
ACCAG294382AG294383
length765699
length of high quality
(start - end)
237 (132 - 368)151 (73 - 223)
definitionCHROMAT_FILE: MSMg01no070_f09.b1 PHD_FILE: MSMg01no070_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:22 2005CHROMAT_FILE: MSMg01no070_f09.g1 PHD_FILE: MSMg01no070_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNCCCCNNCCCCNNNNNTTCCNNCCTTTAT
CCAATTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAAAGACCG
CGGAATTATACCTGTCCCTGTTTGTGGGAAACCCTCTTCCCGTGTTCAGT
GCATCACACTGTGAGCCAGTTCCTTCTCTCATACAGAAGAGATAATAAAT
ATCCGCTTCTAGCTCAAGGAAGCCTCACAGAGCTCTGACTGTCTCCCGTG
GAGTCCATATCAGGGGACAATGGAGAGTAAGGCTCAGGTGACAATGGAGA
GTAAGGTTCAGGGGTATTGGCTTCTGTTGCTTCTGCTCACACCTGATGGT
CACATGACCCTAACCTAATCTTTTTAACAAAGAAGGCTGAAAATGTATCT
GGGGTGTGTTTCTCTCAGGAAGACCTAACTATGATGAATGCGCGGCGCTG
ATGTAAGGCAGTGTGGCTCACATTATCATTTCAAACCGCGTTTATTTTTG
CTACCATTCTTACTATACAGTATGTTTCTGCATATCACAAGACATTGCTA
TCTTCCCTGTTTTCCTAAGCCAGAGCAATGGGTAGACATTCTGCATAGGT
TTTGAGTCACCTTTCTGATTTTTCGTTTAAATGACTGATTTACCTATTTC
ACTGAACGTTTTGATGTATGTTCGGTGGATTAACTATAATAACTACAATA
ATGTAACTAAAGGCCAATCACAAATATTCACCCAAATGAAAGCTATCTGA
TGGGTATAATATTTT
CATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGGAGTGGTCCTGATCAAAACCCATC
CTGGTCAGTAGCTACTGGTCAGTAGCTAATTAAAAGCTTACTTCAAATTT
GGTTCATAATTATGGAGCTGGTTTTCCTCCTGCGGATCTCAGAATTAACG
GTAACTTTCGGAAAGGGATACAGACAGGAAAGGGTGCGAATGGTGCACGC
ATAAGCAGAGAGGTCCATTGTTTCTGGAGCTGTGGGGAAAGCAGAAGATC
ATGAGTGGAGGTGATTCAGTAAGGAGGCAAGCGAGTTCCCTCATGAGAAG
CAAAGACTGAACAAAAGGTAAGGAGGGGAGAGCCAGGATGGGGTTGGCCG
GAGGTAGGAGAGACCCAGCGATCACTTTCTTCTAAACTAGAGCTTGCCTC
ATAGACTTTGGAGTGTCCCATTAAGTGCCTAATCCCTAAGTGGAGTGATC
CAGTCTCTCCCCAAATCCCTAAGTGGGGTGATACAATCTCTCCCCCAATC
CCTAAAGGTGATGATCCAGACTCTCCCCTAAGCTGCCTTTAGTGAAGATC
ATTGCTTCGGAACCAAGTCTTCATGATGTGCAATTTTGTAACACTTTAAA
ATCCCTTTCGCTCTGACACTATTTCGCTAGTTGTTATTATCTGTTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_f09.b1 MSMg01no070_f09.b1 CHROMAT_FILE:
MSMg01no070_f09.b1 PHD_FILE: MSMg01no070_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:22 2005
         (237 letters)



>mm_chr1_190892891_190893527
          Length = 637

 Score =  397 bits (205), Expect = e-115
 Identities = 229/237 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctcttcccgtgttcagtgcatcacactgtgagccagttccttctctcatacagaagag 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccctcttcccatgttcagtgcatcacactgtgagccagttccttctctcatacagaagag 378

                                                                       
Query: 61  ataataaatatccgcttctagctcaaggaagcctcacagagctctgactgtctcccgtgg 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ataataaatatctgcttctagctcaaggaagcctcacagagctctgactgtctcccgtgg 318

                                                                       
Query: 121 agtccatatcaggggacaatggagagtaaggctcaggtgacaatggagagtaaggttcag 180
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||  || |
Sbjct: 317 agtccatatcaggggacaatggagagtaaggttcaggggacaatggagagtaagactctg 258

                                                                    
Query: 181 gggtattggcttctgttgcttctgctcacacctgatggtcacatgaccctaacctaa 237
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 257 gggtattggcttctgttgcttctgctcacacctggtggtcacatgaccctaacctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)