BAC Information

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BAC

Clone NameMSMg01-070K17
Chromosome1 (Build37)
Map Location 29,204,896 - 29,205,259
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665903, Gm597, LOC435614, EG623924
Downstream geneEG433283, LOC100040665, LOC665944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070K17.T7 (MSMg01no070_k17.b1)MSMg01-070K17.TJ (MSMg01no070_k17.g1)
ACCAG294635AG294636
length660668
length of high quality
(start - end)
631 (30 - 660)559 (71 - 629)
definitionCHROMAT_FILE: MSMg01no070_k17.b1 PHD_FILE: MSMg01no070_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:49 2005CHROMAT_FILE: MSMg01no070_k17.g1 PHD_FILE: MSMg01no070_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCCGCTAATACACTCCTATATCGAGAGGATCCGCGGAATTCCTACAAG
ACATTGTTTGATTTCCCAGAATTTCAAGTTTGTATTAATCATTTTAACTT
TAAAAATAATCCAAAATATTTCTGTGACAAAATAAGGCCTTGACATCCAT
AATTGAAGATGAAGTGGCAGACTGTGAAATGAAAAACACATGTCCCCACT
TTCTCCTCTATAAATTACAGTGCCTCTGGTTTTATGTGGAGTTCTTTGAA
TCACTTAGACTTGAGCTTTGTACAAGAATATAAGAATGGGTCAATTCTCA
TTCTTCAACATGATAACCACAAGTTGTTCCAGCATCATTTGTTGAAATTT
ATAGAGGAGAAAGTGGGGAAAAGCCTCAAGGATATGGGCACAGGGGAAAA
ATTCCAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCCACAAATGG
GACCTCATAAATTGCAAAGCTTCTGTAAGGCAAAAGATATTGTCAATAAG
ACAAAAAGGGCACCAACAGATTGGGAAAGAATTTTTACCAATCCTAAATC
TGATAGGGGACTAATATGTAATATATACAAAGAACTCAAGAAGCTGGACT
CCAGAAATTCAAGTAACCCCATTAAAAATGGGGTACAGAGCTAAACAAAG
AATTCTCAAN
NTTCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCACATTTTTTAAT
GGGGTTATTTGATTTTATGGAGTCCACCTTCTTGAGTTCTTTATTTATAT
TGGATATTAGTCCCCTATCATATTCAAAATAAGTAAAGATCCTTTACCAA
TATGTTGGTGGTCTTTTTGTCTTATTGACAATGTCTTTTGCCTTGCAGAA
GCTTTGAATTTTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCAC
AAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCTATATCTTCA
AGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTAT
GTGAAGTTCCGCGACCCACTTAGATTTGACCTTAGTACAGGGAGATAAGA
ATGGATCAATTCCCATTCTTCTACATTATAAGAACCAGTTGTGACAGCAC
CATTTGTTGAAAATGCTCTTTCTTCCACTGGATGGTTTTAGCTCCCATTT
CGAAGATCAAGTAACCTTAGATGTGTGGGTTCATTTCTAGGTCTTCAATT
CTATCCCATTGGTCTACTTGTCTGTCATTATACCAGTACCATGCAGTTTT
TTATCACAATTGCTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_k17.b1 MSMg01no070_k17.b1 CHROMAT_FILE:
MSMg01no070_k17.b1 PHD_FILE: MSMg01no070_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:49 2005
         (631 letters)



>mm_chr1_29204896_29205927
          Length = 1032

 Score =  673 bits (348), Expect = 0.0
 Identities = 360/364 (98%), Gaps = 1/364 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcctac-aagacattgtttgatttcccagaatttcaagtttgtattaatcatttta 67
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaattcctacaaagacattgtttgatttcccagaatttcaagtttgtattaatcatttta 305

                                                                       
Query: 68  actttaaaaataatccaaaatatttctgtgacaaaataaggccttgacatccataattga 127
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 actttaaaaatgatccaaaatatttctgtgacaaaataaggccttgacatccataattga 245

                                                                       
Query: 128 agatgaagtggcagactgtgaaatgaaaaacacatgtccccactttctcctctataaatt 187
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 244 agatgaagtggcagactgtgaaatgaaaaacacatgtccccactttcacctctataaatt 185

                                                                       
Query: 188 acagtgcctctggttttatgtggagttctttgaatcacttagacttgagctttgtacaag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 acagtgcctctggttttatgtggagttctttgaatcacttagacttgagctttgtacaag 125

                                                                       
Query: 248 aatataagaatgggtcaattctcattcttcaacatgataaccacaagttgttccagcatc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aatataagaatgggtcaattctcattcttcaacatgataaccacaagttgttccagcatc 65

                                                                       
Query: 308 atttgttgaaatttatagaggagaaagtggggaaaagcctcaaggatatgggcacagggg 367
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 64  atttgttgaaatttatagagcagaaagtggggaaaagcctcaaggatatgggcacagggg 5

               
Query: 368 aaaa 371
           ||||
Sbjct: 4   aaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space:   634662
Effective search space used:   634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)