Query= MSMg01no070_l13.b1 MSMg01no070_l13.b1 CHROMAT_FILE:
MSMg01no070_l13.b1 PHD_FILE: MSMg01no070_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:53 2005
(502 letters)
>mm_chr1_95634229_95635130
Length = 902
Score = 841 bits (435), Expect = 0.0
Identities = 476/499 (95%), Gaps = 17/499 (3%)
Strand = Plus / Minus
Query: 5 gaattcagtcctgtctgcggggattttgtctgat-aacacatcgaatccgtgtatctgaa 63
||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 523 gaattcagtcctgtcagtggggattttgtctgataaacacatcgaatccgtgtatctgaa 464
Query: 64 ggaggataacaaatacaccaaatgatagactcaggcaaaggctggaccaggcaaagcaaa 123
|||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 463 ggaggataacaaatacaccaaatgatagactcaggc--------------g--aagcaaa 420
Query: 124 tacctgaaagtagtgtgagcactaacagtcatcagaaccgggctagaggtggggctcagt 183
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tacctgaaaatagtgtgagcactaacagtcatcagaaccgggctagaggtggggctcagt 360
Query: 184 gaaggctttgcccagagttcataaagcactgaataaatgagtcaggtcctggtgccagga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaaggctttgcccagagttcataaagcactgaataaatgagtcaggtcctggtgccagga 300
Query: 244 ggatcagaaattcaaggtcatctatgcattgtgttcaaggtcagcctgggctacaagaga 303
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggatcagaagttcaaggtcttctatgcattgtgttcaaggtcagcctgggctacaagaga 240
Query: 304 ccctatttccaagggaagggagtagcagaggagcagggaggagagactcaaagaacataa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ccctatttccaagggaagggagtagcagaggagcagggaggagagactcaaagaacataa 180
Query: 364 taggactgcatttagacaagagtgtacccttagcagggcagtggtggggcacacctttga 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 taggactgcattttgacaagagtgtacccttagcagggcagtggtggggcacacctttga 120
Query: 424 tcccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tcccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctac 60
Query: 484 agagtgagttccaggacag 502
|||||||||||||||||||
Sbjct: 59 agagtgagttccaggacag 41
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_l13.g1 MSMg01no070_l13.g1 CHROMAT_FILE:
MSMg01no070_l13.g1 PHD_FILE: MSMg01no070_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:53 2005
(339 letters)
>mm_chr1_95533399_95534136
Length = 738
Score = 582 bits (301), Expect = e-170
Identities = 338/369 (91%), Gaps = 31/369 (8%)
Strand = Plus / Plus
Query: 1 ttaatgattgaggaatctctgtaggcctttatttttgatttttaagacaggacctcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttaatgattgaggaatctctgtaggcctttatttttgatttttaagacaggacctcattc 230
Query: 61 tgtagcctaggctggcttaaaactctctatgtggccctttttggcctcaaattcacagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tgtagcctaggctggcttaaaactctctatgtggccctttttggcctcaaattcacagca 290
Query: 121 gttctgcctctgc-t-----------------------------tctgcctctgcctctg 150
||||||||||||| | ||||||||||||||||
Sbjct: 291 gttctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctg 350
Query: 151 cctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctg 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctg 410
Query: 211 cctctgcctctgcctctgcctcccaaattgctggggttatccatatgaaccatcagactt 270
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 411 cctctgcctctgcctctgcctcccaaat-gctggggttatccatatgaaccatcagactt 469
Query: 271 catgtgaaaagccctactcatgagattaaacttcgtattggtttattgctttgttcttgg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 catgtgaaaagccctactcatgagattaaacttcgtattggtttattgctttgttcttgg 529
Query: 331 gtcaaatag 339
|||||||||
Sbjct: 530 gtcaaatag 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 119
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 738
Length adjustment: 9
Effective length of query: 330
Effective length of database: 729
Effective search space: 240570
Effective search space used: 240570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
