BAC Information

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BAC

Clone NameMSMg01-070N05
Chromosome1 (Build37)
Map Location 68,418,614 - 68,418,952
singlet/doubletsinglet
Overlap geneErbb4
Upstream geneKif22-ps
Downstream geneLOC667842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070N05.T7 (MSMg01no070_n05.b1)MSMg01-070N05.TJ (MSMg01no070_n05.g1)
ACCAG294755AG294756
length753681
length of high quality
(start - end)
312 (107 - 418)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no070_n05.b1 PHD_FILE: MSMg01no070_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:01 2005CHROMAT_FILE: MSMg01no070_n05.g1 PHD_FILE: MSMg01no070_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTNNNNTTTTTTGTTTTCNGGTTTTTTTTTTTTCTTTCAC
ATATATTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
CGCGGATTCCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTTGATCT
TGTCAAATGCTTTTTCTGCATCTAACGAGAGATCATGTGGTTTTTGTCTT
TGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAAC
CATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTC
TTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTG
CATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGA
TCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCCTAAAATGAGTT
GGATAGAGTACCTTCTACCCCTATCTTGTGAATTAGTTTGTGCTGAACTG
GAATTATATCTTCTTTGAAGGTCTGATATAACTCTGCACTAACACCATCT
GGTCCTGGGCTTTTTTTGGCTGTTACACCATTACTATTTGCTTCTATTTC
TTTTATTATATAATTCATCTGCTTTTAATTCCAATTTGATCCTGTTTTCA
TTATTTTTACACTTGATTATCTTGCCCTCAAATTTCGACCATCTCTTCCT
GCTTTTTCTTATATTTTTTTACCACATACCTCTTTGTTCCATTCGTCTCA
AGT
NCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGGACTTTTATATTCATTCT
TTAAGTGGACTGAAGATCCACTTTTAATTGAAGCTATCTAGAGTAGAGAA
TAATCTACCATTTAATCTACGACTTCTTTAATTGTGTTTGGAATAATAAA
ATATTTAACTTTTACTCTTCATAGTTAGAATGTTACTCATTTAAAATATA
AAAAATAAAGGGAAATAGAAAAAAGTGACACCAAACATAATCACAAACAG
TCACTTTAGTATTCTATTTATTTCTGGTTGAGTTGAAATTTTTCTTTTGG
AGTTTCAATTACTAACCTAAGATTTGTTTCCAGAATCAGTATGTTACATA
CATAAATATGGACATTGCCCACTTATATATTCAAAATACATTTAAACTTT
TGTGGGAGGTTGAGACAGGGTTTCTCTGTATAGCCGTTGCTGTCCTTGAA
CTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTGCCTCT
GCCTCCCAAGTGCTTGTATTAATGGCGTGTGCCACCACCGCCCATCACAT
TTAAACTTTTAAGAGTGAAAAGTCACTGAAAAAATTGTCTGCAGTTTTTG
TCATATAAGTATGTACTAGTTCTACTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_n05.g1 MSMg01no070_n05.g1 CHROMAT_FILE:
MSMg01no070_n05.g1 PHD_FILE: MSMg01no070_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:01 2005
         (339 letters)



>mm_chr1_68418414_68419152
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaggacttttatattcattctttaagtggactgaagatccacttttaattgaagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaaggacttttatattcattctttaagtggactgaagatccacttttaattgaagcta 260

                                                                       
Query: 61  tctagagtagagaataatctaccatttaatctacgacttctttaattgtgtttggaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagagtagagaataatctaccatttaatctacgacttctttaattgtgtttggaataa 320

                                                                       
Query: 121 taaaatatttaacttttactcttcatagttagaatgttactcatttaaaatataaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaatatttaacttttactcttcatagttagaatgttactcatttaaaatataaaaaat 380

                                                                       
Query: 181 aaagggaaatagaaaaaagtgacaccaaacataatcacaaacagtcactttagtattcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagggaaatagaaaaaagtgacaccaaacataatcacaaacagtcactttagtattcta 440

                                                                       
Query: 241 tttatttctggttgagttgaaatttttcttttggagtttcaattactaacctaagatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatttctggttgagttgaaatttttcttttggagtttcaattactaacctaagatttg 500

                                                  
Query: 301 tttccagaatcagtatgttacatacataaatatggacat 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttccagaatcagtatgttacatacataaatatggacat 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)