BAC Information

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BAC

Clone NameMSMg01-070N18
Chromosome1 (Build37)
Map Location 40,081,169 - 40,081,540
singlet/doubletsinglet
Overlap geneMap4k4
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065
Downstream geneIl1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070N18.T7 (MSMg01no070_n18.b1)MSMg01-070N18.TJ (MSMg01no070_n18.g1)
ACCAG294780AG294781
length726712
length of high quality
(start - end)
231 (67 - 297)372 (143 - 514)
definitionCHROMAT_FILE: MSMg01no070_n18.b1 PHD_FILE: MSMg01no070_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:04 2005CHROMAT_FILE: MSMg01no070_n18.g1 PHD_FILE: MSMg01no070_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTATACGACTCCTATAGTGCGTGATACGGCGGAATTCAGCAA
GTGTTGCCAAATAAAAGAACTTGTTCAGCAAGTTCGGGGCTCCGTGTGGG
GATGGAGGATCTTTGGGGGAGAGGCTCTTCTTAGGGAATCTTAGGGATCT
GCACGTGAGCAGATCATGGTAACTCTCCCTTGTAGTCCCCACACTCTGAA
GGCAAGGGCAGGGGGACTATAGCAGTCAGAGGCCAACCTGGTCTACATAG
TGAGTTCAGGGCTATATCCAGGGGTGCAGAGTGCGATCTGTCTCACAAAA
AAAAAATTTTCTTACAAAAATAATAGAACAAAACCACATGACTGATCCCA
GCTCCTGTGCACAGTGTAACATCACTTGCGAGTGTGTATGTGTTTGCGTG
CGTGCGTGCGCGCGTGCGTGCGTGTGTGTGTGTGCGCGTGCGTGTGTGAG
TGTGTGTGTATGATGCTCTGTTATCTCCCCCTACACACTTCTGACTGGAT
TGCAGGCGCATCTGTCTAGGACTGTGGCATGAATTGTAGCGCTCCCCGGC
GCAAATAATTGTGTTTCCTGCTGTGTACGTCCGTGGGCTGTCACCCCTCT
TCTTCTCCCACGGGTGTGGTGCCTTTGGTGTTTTTTGGTTTGCTGCCTTT
GCCATGTGTTGTGATGTATTCATTCAGCGTCTAAACCTCTATTTGGATGG
TAGCGTGTTTTTGCAGCCGGAGCGTG
GTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAAGGTCTCGCTCAGGGTCTTGCCGACTCCAGAGG
TCAGTGATCCCAGCTCACACTGCCTCTACCAGCTCAGAAGAGAAGTCCTG
CCTAAGGTCATGAAATAGACCTGGCTGCTGCCACCAGAGCGGACGGAGGC
AAAGAACACCTGCAACACAATGAGAGGACACAGTCAGCAGCCATTCACTA
TCTCCTGATGCCCAACCCCAGATAGGCCCAAACAAAGTGTCTCCTTGGTT
TATTTTATAATGCATCATCACTGCCAGTGGACCACAAGCCACTGTACACA
GCAGCCACAAGTGCCCAGACGCCATAAGGGAGCTTTACCTTGTCATTGCG
TTCACACAGGAACTTTATTCTCTGAGCCCTTTTGTGCATAAATACACCAT
CCAAGTGACCAGTTTCCACAGATCGTATCTCTATTGCCTTCTCTCCCCAG
CCCATTGTCTGATTCGACCGTATATATGCTTTGAGAGAGAGATAGAGAGA
GAGAGAGAGAGAGATAGAGATAGAGAGAGATAGAGAGAGAGAGATAGAGA
GAGAGAAAGGCTTATCGAGGATGATTCTTTGAAACCCCGTTTCTGATTCC
CTTGACCGGATGCTGTTTCCTAAACCATGAAGTCTTGTTTTGCCACGTAT
TCTTGCTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_n18.g1 MSMg01no070_n18.g1 CHROMAT_FILE:
MSMg01no070_n18.g1 PHD_FILE: MSMg01no070_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:04 2005
         (372 letters)



>mm_chr1_40080969_40081740
          Length = 772

 Score =  673 bits (348), Expect = 0.0
 Identities = 366/372 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtcctgcctaaggtcatgaaatagacctggctgctgccaccagagcggacggaggcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aagtcctgcctaaggtcatgaaatagacctggctgctgccaccagagcggacggaggcaa 513

                                                                       
Query: 61  agaacacctgcaacacaatgagaggacacagtcagcagccattcactatctcctgatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 512 agaacacctgcaacacaatgagaggacacagtcagcagccattcactatctcctggtgcc 453

                                                                       
Query: 121 caaccccagataggcccaaacaaagtgtctccttggtttattttataatgcatcatcact 180
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 452 caaacccagataggcccaaacaaagtgtctccttggtttattttagaatgcatcatcact 393

                                                                       
Query: 181 gccagtggaccacaagccactgtacacagcagccacaagtgcccagacgccataagggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 392 gccagtggaccacaagccactgtacacagcagccacaagtgcccagacgccgtaagggag 333

                                                                       
Query: 241 ctttaccttgtcattgcgttcacacaggaactttattctctgagcccttttgtgcataaa 300
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 332 ccttaccttgtcattgcgttcacacaggaactttagtctctgagcccttttgtgcataaa 273

                                                                       
Query: 301 tacaccatccaagtgaccagtttccacagatcgtatctctattgccttctctccccagcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tacaccatccaagtgaccagtttccacagatcgtatctctattgccttctctccccagcc 213

                       
Query: 361 cattgtctgatt 372
           ||||||||||||
Sbjct: 212 cattgtctgatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)