Query= MSMg01no070_n21.b1 MSMg01no070_n21.b1 CHROMAT_FILE:
MSMg01no070_n21.b1 PHD_FILE: MSMg01no070_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:05 2005
(469 letters)
>mm_chr1_84403383_84404251
Length = 869
Score = 870 bits (450), Expect = 0.0
Identities = 459/462 (99%), Gaps = 2/462 (0%)
Strand = Plus / Minus
Query: 9 tctctctctctctctttctctctctctctccctctctctgagacaaggtcttgagcttgt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tctctctctctctctttctctctctctctccctctctctgagacaaggtcttgagcttgt 799
Query: 69 tatggagccaagggtgactctaaacttctgattctcttgactcaaactttggtgtgttgg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tatggagccaagggtgactctaaacttctgattctcttgactcaaactttggtgtgttgg 739
Query: 129 gattgtatgtgtgtaccacatacatgtatgtgtggctggtttctgtggtttgagggatca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gattgtatgtgtgtaccacatacatgtatgtgtggctggtttctgtggtttgagggatca 679
Query: 189 aacactgggtgagctacatcctaagactctaggaatggaagcttcaggaagagaccatgc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aacactgggtgagctacatcctaagactctaggaatggaagcttcaggaagagaccatgc 619
Query: 249 acatccaagtgcagaagtaagtttcccttcaaggccctggacacagagaggagagattgc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acatccaagtgcagaagtaagtttcccttcaaggccctggacacagagaggagagattgc 559
Query: 309 ttcctgcaggtatgaag-cagtgagatcagggaaacacttgggaaaaatcccagacaaga 367
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttcctgcaggtatgaagcca-tgagatcagggaaacacttgggaaaaatcccagacaaga 500
Query: 368 tgctgatcaatgtttgactatgacaaatattcaacacagatccagaaattaagggctgct 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgctgatcaatgtttgactatgacaaatattcaacacagatccagaaattaagggctgct 440
Query: 428 gttctaaaatggtctgctcaagtagggcgatcttgtgtgtag 469
||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 439 gttctaaaatggtctgctcaagtagggcgatctcgtgtgtag 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_n21.g1 MSMg01no070_n21.g1 CHROMAT_FILE:
MSMg01no070_n21.g1 PHD_FILE: MSMg01no070_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:05 2005
(425 letters)
>mm_chr1_84251031_84251853
Length = 823
Score = 739 bits (382), Expect = 0.0
Identities = 413/424 (97%), Gaps = 2/424 (0%)
Strand = Plus / Plus
Query: 2 gaattccacattgtcctcagatgaacttacagagccactcgcattgttaaccaacaacca 61
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctacattgtcctcagatgaacttacagagccactcgcattgttaaccaacaacca 261
Query: 62 caaatgttcctcaagaaatagaacccacacagcctgagaccatgtctttttaacattttt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caaatgttcctcaagaaatagaacccacacagcctgagaccatgtctttttaacattttt 321
Query: 122 tggtccaagcagctgtttgcatgcttaatacttgtccgattccagctcagaaatgagaca 181
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 322 tggtccaagcagctgtttgcatgcttaatacttgtcccattccagctcagaaatgagaca 381
Query: 182 gcgtctctgggtgatgcacacaccaaaagcgcttgatttgttttggatgcagtaaaagca 241
| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 382 gtgtctctgggtgatg--cacaccaaaaacgcttgatttgttttggatgcagtaaaagca 439
Query: 242 tccttacttatcattggggacactctgctttttcagcacagagatttggcaagaaggtgg 301
|||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 tccttacttaacagtggggacactctgctttttcagcgcagagatttggcaagaaggtgg 499
Query: 302 gagcaacagccaagttataaaaaccttaaagatttacagcagatgccaagaacaggccca 361
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 gagcaacagccaagttataaaaaccttaaagatttatagcagatgccaagaacaggccca 559
Query: 362 caccctgataaacatggatggaaatctttttgcagggatggacaagatcagggaaaccat 421
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 caccctgataaacatggatggaaatctttttccagggatggacaagatcagggaaaccat 619
Query: 422 gggc 425
||||
Sbjct: 620 gggc 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 823
Length adjustment: 9
Effective length of query: 416
Effective length of database: 814
Effective search space: 338624
Effective search space used: 338624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
