Query= MSMg01no070_p20.b1 MSMg01no070_p20.b1 CHROMAT_FILE:
MSMg01no070_p20.b1 PHD_FILE: MSMg01no070_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:14 2005
(453 letters)
>mm_chr1_10935138_10935990
Length = 853
Score = 818 bits (423), Expect = 0.0
Identities = 444/455 (97%), Gaps = 8/455 (1%)
Strand = Plus / Plus
Query: 3 gaattcacactcagttctcatttctggcatagcttcccctattccatatcaacctcttaa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcacactcagttctcatttctggcatagcttcccctattccatatcaacctcttaa 262
Query: 63 cctgttccctgtatttgctccctgtcttctgtaaattctaaaactagagctggcatccca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cctgttccctgtatttgctccctgtcttctgtaaattctaaaactagagctggcatccca 322
Query: 123 taactatggcttcatgccaactctgcttccataagctagtccttgctccataaagagccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taactatggcttcatgccaactctgcttccataagctagtccttgctccataaagagccc 382
Query: 183 acatgttcccagttactcattctgttcccatgatcataagcaggccaaaactcaatgttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acatgttcccagttactcattctgttcccatgatcataagcaggccaaaactcaatgttt 442
Query: 243 cactatgttgcttttatctctactgagcaaatgcctggaacaaaactggtcagtaagcat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cactatgttgcttttatctctactgagcaaatgcctggaacaaaactggtcagtaagcat 502
Query: 303 gagataaatatttattgaataaatgttgcctgtgttttatatcaacctctgatttttaac 362
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 503 gagataaatatttattgaataaatgttgcctgtgttttatatcagcctctgatttttaac 562
Query: 363 tagaatgatg----cccccagcaacaatgtcctggtcagctttctgattctgtgacaaag 418
|||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagaataatgggttc----agcaacaatgtcctggtcagctttctgattctgtgacaaag 618
Query: 419 taggtgagaaaaatcaccttaatggcctgtgcagt 453
||||||||||||||||||||||||| |||||||||
Sbjct: 619 taggtgagaaaaatcaccttaatgggctgtgcagt 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_p20.g1 MSMg01no070_p20.g1 CHROMAT_FILE:
MSMg01no070_p20.g1 PHD_FILE: MSMg01no070_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:15 2005
(242 letters)
>mm_chr1_11084628_11085269
Length = 642
Score = 468 bits (242), Expect = e-136
Identities = 242/242 (100%)
Strand = Plus / Minus
Query: 1 ctaccttcctgtagccaaattaactcaaataagattattacagtcttagatgtctaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctaccttcctgtagccaaattaactcaaataagattattacagtcttagatgtctaaata 383
Query: 61 gagtctgggatgtcatgctaaaaggtttgaagaaaatagagcctattcaactttagttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gagtctgggatgtcatgctaaaaggtttgaagaaaatagagcctattcaactttagttag 323
Query: 121 agctttagttagagttagagtcaggaagttcagttgctccaaaatcattttcaagtttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agctttagttagagttagagtcaggaagttcagttgctccaaaatcattttcaagtttca 263
Query: 181 cactgtttctattggttatctgacctacaccatttctgtaaagttaacttttatttgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cactgtttctattggttatctgacctacaccatttctgtaaagttaacttttatttgaaa 203
Query: 241 ag 242
||
Sbjct: 202 ag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
