BAC Information

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BAC

Clone NameMSMg01-071H20
Chromosome1 (Build37)
Map Location 81,941,399 - 81,941,921
singlet/doubletsinglet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071H20.T7 (MSMg01no071_h20.b1)MSMg01-071H20.TJ (MSMg01no071_h20.g1)
ACCAG295261AG295262
length709712
length of high quality
(start - end)
279 (40 - 318)526 (68 - 593)
definitionCHROMAT_FILE: MSMg01no071_h20.b1 PHD_FILE: MSMg01no071_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:55 2005CHROMAT_FILE: MSMg01no071_h20.g1 PHD_FILE: MSMg01no071_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGCGCGGAATTCTA
TTGAGTATCTTTGCATCGATATTCATAAGGGAAATTGGTCTGAAGTTCTC
TAACTTTGTTGTGTCTTTCTGTGATTTAGGTATCAGAGTAATTGTGGCTT
CATAGAATGAATTGGGTAGATTACCTTCTGCTTCTATTTTGTGGAATAGC
TTGTGAAGAACTGGAATTAGATCTTCTTGGAAGGTTTGATAGAACTCTGC
ACTAAACCCATCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATGA
CTGCTTGTATTTCTTTAGAGGATATAGGACTGTTTAGATCATTAGCCTGA
TCCTAATTTAACTTTGGTACCTGGCCTCTGTCTAGAAATTTGTCCATTTC
GCCCAGGCTTTCCAGATTTGCCGAGGATATCCTTTTGTAATAGGATCTTG
ATGTTGTATTGGATTTCCTCAGACTCTGGTGTTATGTCTCCCTTTTGATT
TCTGACTTTGCTAATTAGGATGCGATCCCTGTGCCCTCCAGTGATTCTGG
TTAATCGTGTATCTATCTTGCTGATTTTTTCACGTAATCACCTCCTCACT
TGGTTGTTTCCTTCAATACGTCAGCTGGGGTTTTTTTGCGGGTTGGCACC
CCTGAATGTGAGTATATTGTGTCTTCTACTGCCCTTCGGTTGATTTGGTT
CGTTGGTGT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGCTTTAATGTAATGAGATGGAAGTTGCTAGGG
AGGTTTCTGTCTTCCCTGTGGAGATCTTTACTCAGAATTCCAAATGTTTT
CAGCTGGCCTGTGATTCCCCAACTCTTTCAAGTAACAAGAAAAACAAAAT
ATAAATGTGAATTTTAAACTTATATGGAAACCGTTTTATTCACCAAAGCA
AATTCTCAATTGGTAATAAAATGGGGATGGGGTGGGGAACCCATTCAAAA
AAAATGTCAGGATTCAAACATGCCCCATTTTTCTTCTTCTCCAAGATACC
AGCTTATGCCAAGTGGAATTCCACCAGACAGTGGAAGCCACTTTAAGTTT
TGTGCTAATCCTCTGTCCTTGTGACTCTTGAAGACTTATGAAGCCATTCT
CTATCTAAACCCTGCTCCTGCTCCAAGGCTACACAGAAAATTTCCTCCTA
TTTAAACAGTGAACTACTAATGTTAAATGCTTTCTGGTTGACTTTCCAAT
TTGACTTTCCAACAAATTTATTGTAACAGAATTATCCTAACTTATAGTGC
ACGCCGGTAAGAGAATTGTGTGCCAGTCTAGTCCTAGTACCCATTTCCAA
AATGACTTCCCCAAGGTAAAACCCAAAGCCCTTTGTATCTTTCTCAGGAT
CTTGCATCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_h20.g1 MSMg01no071_h20.g1 CHROMAT_FILE:
MSMg01no071_h20.g1 PHD_FILE: MSMg01no071_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:55 2005
         (526 letters)



>mm_chr1_81941199_81942124
          Length = 926

 Score =  996 bits (515), Expect = 0.0
 Identities = 521/523 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttaatgtaatgagatggaagttgctagggaggtttctgtcttccctgtggagatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 agctttaatgtaatgagatggaagttgctagggaggtttctgtcttccctgtggagatct 664

                                                                       
Query: 61  ttactcagaattccaaatgttttcagctggcctgtgattccccaactctttcaagtaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttactcagaattccaaatgttttcagctggcctgtgattccccaactctttcaagtaaca 604

                                                                       
Query: 121 agaaaaacaaaatataaatgtgaattttaaacttatatggaaaccgttttattcaccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agaaaaacaaaatataaatgtgaattttaaacttatatggaaaccgttttattcaccaaa 544

                                                                       
Query: 181 gcaaattctcaattggtaataaaatggggatggggtggggaacccattcaaaaaaaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gcaaattctcaattggtaataaaatggggatggggtggggaacccattcaaaaaaaatgt 484

                                                                       
Query: 241 caggattcaaacatgccccatttttcttcttctccaagataccagcttatgccaagtgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 caggattcaaacatgccccatttttcttcttctccaagataccagcttatgccaagtgga 424

                                                                       
Query: 301 attccaccagacagtggaagccactttaagttttgtgctaatcctctgtccttgtgactc 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atcccaccagacagtggaagccactttaagttttgtgctaatcctctgtccttgtgactc 364

                                                                       
Query: 361 ttgaagacttatgaagccattctctatctaaaccctgctcctgctccaaggctacacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttgaagacttatgaagccattctctatctaaaccctgctcctgctccaaggctacacaga 304

                                                                       
Query: 421 aaatttcctcctatttaaacagtgaactactaatgttaaatgctttctggttgactttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaatttcctcctatttaaacagtgaactactaatgttaaatgctttctggttgactttcc 244

                                                      
Query: 481 aatttgactttccaacaaatttattgtaacagaattatcctaa 523
           ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 243 aatttaactttccaacaaatttattgtaacagaattatcctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)